RNA id: AMCG00006717


Basic Information

Item Value
RNA id AMCG00006717
length 1155
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00006717
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 15735298 ~ 15739448 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCCTATGGTTCTGTTTCTCATTTCAGCACTTGCTGCTTGGCCTCTTGGCTTGGAAGCTCATGTGGTTGACGACTTTTCATTGTGTAAGGAATTCTTTTACgaaaacactgaacccacaggTATAGATCAGAATGCTGCAAAAATCTGCCAGAAAAAACGTTTCTACTACTACGCATCCCTGTATTCCAAAAGTCATCGGATACCAGTGTACAGTGCCTACAATTTTCACTTTACCTGCAGAGACAATGTTGCACAGAGAAGAGAAGTCTGGTTTATTGAACCACAGaTTTCTAACCTTGATGGAGAAGACATGACTCTtgcaagacaaaacaaagaccTGATCAAACTAAATCAAGCGCTCAACGAGGATTATGAACACACCGACTATGACCGTGGACACTTAAACCCAAATAATTATCAGTGTAACGAAGGCCGTGTCGCCACTTTCACGCTGACCAATGCTGTGCCGATGGATGCGTGTTTCAATCGAATCCACTGGAAAAAATATGAGGATTATTTGAGAAGTATAGTACTAGACCTTTCTTGGAAGGGAACCCCCTATTTTGTGACAGGGGCCGTGCCTTCAAGAAACAGAATCCCTGTGCCAGGGTTGGACGCCACTGAAGAAGAACGGGAATTTAGTAGGGTTACAATTCCCAGTCACATGTGGACTGCTTTGTGCTTTAAGCATAATGATGAGCAGGATTCATTTTCTATAGGTTACATAGGAGAGAATAAAGCAGATGCCATCATCCAAGTAATGTCAATCCCTAATCTTGTTGACAGGCTGAGTGAGCTATATAGCAGCCCTCAACTGAAGATCTTTGACGATGATTGTTATTCTAATACTCTGAAATCCAAACAAATTCTACAGCAACTCTTTACAAAACTGCATCTCCCCCAGCTTCAAAGAGCATTTTCCTTAGATGTAAATGTGCAAAATCTTTTAACTGCGAGCTTATCGAAGAGGCAGAGGCGTAGTGGCAGTCACGAACCAGATAAAAAGCCCAGAATTACTCAGATGACGGTAGAATTGAACTACAAGGATATGACCGCGTGGTTCGACAACAATGAGTACATGAAGCGCAATGCCATCACTACTTGTATATTCGAACCCAAGTTGAACGTGCACTCTTCCTGGCCGACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139937 lncRNA downstream 5765 15728613 ~ 15729533 (-) True G111759
TU139912 lncRNA downstream 75886 15657998 ~ 15659412 (-) True G111736
TU139903 lncRNA downstream 177097 15557943 ~ 15558201 (-) True G111730
TU139901 lncRNA downstream 197462 15537476 ~ 15537836 (-) True G111728
TU139797 lncRNA downstream 940349 14794718 ~ 14794949 (-) True G111630
TU139944 lncRNA upstream 2998 15742446 ~ 15742715 (-) True G111765
TU140035 lncRNA upstream 141682 15881130 ~ 15896843 (-) False AMCG00006719
TU140185 lncRNA upstream 1123229 16862677 ~ 16862967 (-) True G111940
TU140191 lncRNA upstream 1158971 16898419 ~ 16901537 (-) True G111945
TU140192 lncRNA upstream 1158971 16898419 ~ 16901537 (-) False G111945
AMCG00006718 mRNA downstream 8 15734665 ~ 15735290 (-) True AMCG00006718
AMCG00006712 mRNA downstream 30691 15702374 ~ 15704607 (-) True AMCG00006712
AMCG00006711 mRNA downstream 44251 15686692 ~ 15691047 (-) True AMCG00006711
AMCG00006707 mRNA downstream 104127 15627216 ~ 15631171 (-) True AMCG00006707
AMCG00006706 mRNA downstream 160543 15564599 ~ 15574755 (-) True AMCG00006706
AMCG00006715 mRNA upstream 16834 15756282 ~ 15765276 (-) True AMCG00006715
AMCG00006714 mRNA upstream 106783 15846231 ~ 15848777 (-) True AMCG00006714
AMCG00006716 mRNA upstream 110473 15849921 ~ 15869937 (-) True AMCG00006716
AMCG00006719 mRNA upstream 151805 15891253 ~ 15896869 (-) True AMCG00006719
AMCG00006720 mRNA upstream 160095 15899543 ~ 15928141 (-) True AMCG00006720
TU139783 other downstream 981328 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 981328 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 1370876 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 2232070 13455432 ~ 13503228 (-) True AMCG00006663
TU139244 other downstream 2856642 12876292 ~ 12878656 (-) True AMCG00006641
TU139946 other upstream 13373 15752821 ~ 15753235 (-) True G111767
TU140351 other upstream 1893443 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 2599822 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 3893789 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 4496408 20235856 ~ 20236206 (-) True G112420

Expression Profile