RNA id: AMCG00006719


Basic Information

Item Value
RNA id AMCG00006719
length 2899
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00006719
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 15881130 ~ 15896869 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGGATTATATTGTGGGTCATATTGACTACCTGACGCATGTTTACGTCTCAGGCATTTCTTTACAGTAATAAGTTATTCAATTCCCAATGCTTTTCatctcttttttctttgtccACGCATTTGTTTTAAGCGACTGGGACAGGAGAAGGGGCTTGAGTTGTGCCTGAGGAGTCGTGTTtgaaAAGCGGAACTACCATGGAAGTGGATTGAGTGCAAATGGATTAATCCAGCATCAGTAATCAATCAGAGTAAGATACACAGACGTGTCTGGAGATGAAAGATGTGCAGAGTTTGGGCATCGGGACCCTGGTGCAGATCGCCGAAACTCTGGAGTCCATTGTTGGTCGCTGTTTCGGACCACATGGGGGCCAGGTGCTTTTCACAAAGGCCACTGGAGAAGTGCTTTTAACACGAGATGGAAAACAGATATTCACTTCCCTCTTACTGGATCACCCCGTAGCCAGAGTGCTGGTGGATTGTATTTCTGTCCACTGCAGTGTGACTGGAGACGGTGCCAAGTCGTTCATTCTGCTCCTGTCTGCGCTGCTCCGAGGGCTGCAGGCCTCAGTGGGAAAGGGCACGGCAGGACAAACCACCTGTCACCGCTCTTTAAACAGGGGAAAACAAGTGAGTCACGAATTGAGGCGGGTGGCCAACTGTCTCCTCACATTTCAGACGCATGTCCTGGAGGGAATTATACAGCAGCACCTCGGCCAGCATGTCACGTCTTTGTTTTCCCATGATGGCCGGACCACGGGGAAAGATAAGCTGCAGTCGATTATGGAGGCGTACTTCTGTGGAAAGACAGGCCGTGCTCACTGCAGGTTGCTCAGCGCGTTGGCTTGCGATTACTATTTCAAATGTAACTGTGAAGGGAACAGGGTGGGGGCGCTGAGTTTAATTTGTGAACACTTCTCTGAGCTGCACACGACAGTAACAGGCCTCCCTGTGAGCAGCTCCCAGATCTTGGAAGGACTAGTCCTCCACAGAGATTTCACGGTGCATTGCCCCACAGATGGCCAGTTAAACATCGTGGTTGTTACAGAACCTATTCAGCCTTCTTTCTCGGCCTCTGGTACAACACTACACCTTGGATCAGATTCTCAGCTGCAGAGCTGTTATAGCTGGATCAGTGACAGAGTGGAAGAAATGATGAACTCTTTACATCAGAGCCAGGTAAAGCTCCTATTGTCTAGTGTAAAGCAATCTGACCTTGTCCTTTCTTATGCCAAGCTGAGAGGTATATCTGTCGTGGAATGTATCGAGGAAGATGAGCTGGCTTTGTTCTGCAGCTGTAGTGGAGCATCACCATTGGCTTCGTCTTCAGGCGTTCTCCAGGTCAGACAGGAGCAGCTTGCCGGCGCAGAGTTTTGCAGACCTGTGTTGCTCGGGTCCCACAGATACGCACACGTGCGCTTGCTGCCTCAGACCGTCTTTGCCCCGCACTGTCTGGTTCTTTGTGGGACCGTCCCAGGACTCTCAGAACAGTACGTCTCTGCCTTCCATGGTGCTTTCTGCATGCTGCGTCGAACCTGTGAGCCGGTTGATTCCCGAAACTTGCAGGGCGTGTTCAGCAATGCTCCAGCCACTGCTCATGTCAAAGGCACCCATGAAACCTTAACCAACCGTAGCGTGAAGACTACTCTGGAGGTAGTTGCCGTTGATGACACAAACACGGACTGTCCTGATCCTCGGTGTCCGGTCGTCGAGGATCTGCATTCTGGCTGTGATTCAGTTGATGATGAAAAGCAGGGGGGGGGACCAATGACAGGAGATCAGAGGACGTTTCAGGAATGGCTTGTTGATGATAAACGTAATCAGTTAGGAAGTCAGAGCTCGTCTTCAAACAGTCACTGCTGCAGCGTGTCAGATCCAGATCCCCCCCAGTCTGGCTTCACGTGTGCTGTTTCTAATGAGCACATGGTGAAAAGAAACTCAGTTTGTCTGATCAACCCAGTAAATGTTGTGCTAGTAAATCAGTGCAGAGTCTGCTTTAGTGATGTTGCACCTGGCAGTTCCAGCAGACCAGGGCAGTCTGAGAGTTTAGTAGAAGCTGGCAGCATGTTGCCAGTAGGAGGCAGTTTTGAGTTTCTTTTACAGCACTATCTGAAGCTGTACTCCACACAGAGCCTCCATCCTGACACAAAGACAGCATGTGATCTCTTAGCAGAGGCTGTGCTCAACATACCCAGGACTATTTACAGAGGAAAAGGAACAAACAGACGCTTTTTACAAGTGTACACCGAGTTTAAAAACGAGATCCAGAGAAAAGCCCAAAGGAAGGAGGGCCCTGTGTTGTATGAGTCCGTGTCCTGTAAATATCAGCTGCTGCTCTCAGTGTTGCAGTGTCTGAGGACGCTGGTGGCAGCTGACTTTTTGATTCATGTGGGCGAAAAAACTCTGACCGTAACGGAAAGGGATTCAGAAGACAGTGACTCATTTTGTTAAAGTGACTaaagtgttatgtttgtttCAGTATGTGGCAATACTGTCAAATATATGTCTagtttatattttctctctgaaatGACACATACCTGTATATTTAATAGGATAAGTTTATTTCCTAGCttgcatttcagatttaaaatgtggCATTGGGAGCAGACTGCCATCTGAAGCCTGcactttatgtatatataatattcctCTTTTTTTCAGGATGTCATATTATGGGTCACAAGTGAAAGGCAgattatagtgtttttttttactgattatgtcttttttttattttttggctgcAGCCTTACATGTTTTTACTCTATTCcactatgtatgtatttattttgatataattGTCTGGAGCCTCACACCAGTGCCTGTCTGCAGATTGTCAAAACAATACTTCACACTCTATAATTacctcattatatatatatatatatatatatata

Function

GO: NA

KEGG:

id description
K19401 BBS10; Bardet-Biedl syndrome 10 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139944 lncRNA downstream 148538 15742446 ~ 15742715 (-) True G111765
TU139937 lncRNA downstream 161720 15728613 ~ 15729533 (-) True G111759
TU139912 lncRNA downstream 231841 15657998 ~ 15659412 (-) True G111736
TU139903 lncRNA downstream 333052 15557943 ~ 15558201 (-) True G111730
TU139901 lncRNA downstream 353417 15537476 ~ 15537836 (-) True G111728
TU140185 lncRNA upstream 965808 16862677 ~ 16862967 (-) True G111940
TU140191 lncRNA upstream 1001550 16898419 ~ 16901537 (-) True G111945
TU140192 lncRNA upstream 1001550 16898419 ~ 16901537 (-) False G111945
TU140193 lncRNA upstream 1001550 16898419 ~ 16899893 (-) False G111945
TU140194 lncRNA upstream 1001550 16898419 ~ 16901537 (-) False G111945
AMCG00006716 mRNA downstream 21316 15849921 ~ 15869937 (-) True AMCG00006716
AMCG00006714 mRNA downstream 42476 15846231 ~ 15848777 (-) True AMCG00006714
AMCG00006715 mRNA downstream 125977 15756282 ~ 15765276 (-) True AMCG00006715
AMCG00006717 mRNA downstream 151805 15735298 ~ 15739448 (-) True AMCG00006717
AMCG00006718 mRNA downstream 155963 15734665 ~ 15735290 (-) True AMCG00006718
AMCG00006720 mRNA upstream 2674 15899543 ~ 15928141 (-) True AMCG00006720
AMCG00006722 mRNA upstream 135550 16032419 ~ 16039388 (-) True AMCG00006722
AMCG00006723 mRNA upstream 154497 16051366 ~ 16061810 (-) True AMCG00006723
AMCG00006734 mRNA upstream 819406 16716275 ~ 16783557 (-) True AMCG00006734
AMCG00006735 mRNA upstream 903977 16800846 ~ 16835040 (-) True AMCG00006735
TU139946 other downstream 138018 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 1137283 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 1137283 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 1526831 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 2388025 13455432 ~ 13503228 (-) True AMCG00006663
TU140351 other upstream 1736022 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 2442401 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 3736368 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 4338987 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 4957188 20854057 ~ 20949836 (-) False AMCG00006813

Expression Profile