RNA id: AMCG00006720


Basic Information

Item Value
RNA id AMCG00006720
length 3136
RNA type mRNA
GC content 0.50
exon number 20
gene id AMCG00006720
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 15899543 ~ 15928141 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAGAAGAGGGCGTCCTGCGCCGCCGGTTCTCCACGTGCGCCGGGGTGACGGTCGTCTTCCCACCCCGCACCGACGGGCGCAAGCTCATTCGCAACGCCTCTTTCGGAGGATACAATGAGCTCTCACCTATCCTGCCAGGTTTTGACAGAGGGAAAGATGATGTCTTACAGCTCAAAGAGGACTCCACTCATGCAATGTCTAAAAGCAAGGTCCAGAAGAAGAACTACAGGGAAGAAAAGAAGCGCGCCACAAAGGAGTTACTCAGCACAATCACGGACCCTTCAGTTATTGTCATGGCTGACTGGTTGAAGatTCGGGGGACACTGAAGAGCTGGACCAAGTTGTGGTGTGTGCTGAAGCCAGGGGTTTTGCTGATTTACAAGACCCCCAAGAATGGCCAGTGGGTGGGCACGGTGCTGCTGAATGCCTGTGAGCTCATCGAGCGGCCCTCCAAGAAGGATGGCTTCTGCTTCAAGCTGTTCCACCCCCTGGAGCAGTCCATCTGGGCTGTAAAGGGTCCCAAAGGGGAAGCGGTGGGATCCATCACTCAGCCTTTACCCAGCAGCCACCTCATCTTCCGGGCAGCTTCCGAATCAGATGGCCGCTGCTGGATGGATGCTCTGGAGCTGGCCTTGAAGTGCTCCAGCCTGCTGAAGCGAACCATGATCCGGGAGGGGAAGGAGCACGAGCTGGGCTCCACAGGGGAGCACTCTCAAGTCAACTTCTACAGCCTGCTTCGAGCGAACAACCTGCCCGGCACCGAAAGCTTCCAGTTTAACGACAGTGAAATCGAGAGGCAGCATTTCAAGGACAACGACCTCTACTCCGACAAGTCTGACCGGGAGAACGAGCAGGACCACGAGGAGTCGGACAACGATGTGCTGGAGAAGAGCGAGGAGAGCGACACGGACACCTCTGAGAGGCAGGACGACTCCTATGTGGATCTGGAACCCAACGAGATGCTGCAGGAGACAACGTACATTGAGCAGTCTCATGAGGAGCTGGGGGAGGCAAGTGCAGGGGAGGCCTCGCAAACAGAGACTGTGTCAGAGGAGAACAAGAGCCTGATCTGGACCTTACTGAAGCAGGTCCGGCCAGGCATGGACCTGTCCAAGGTAGTCCTGCCCACATTCATCCTGGAACCACGCTCCTTCCTGGACAAGCTCTCCGATTACTACTACCATGCGGACTTCCTCTCAGAGGCTGCCGTGGAGGAAAATGCCTACAACCGAATGAAAAAAGTTGTAAAATGGTATTTGTCTGGGTTTTACAAAAAGCCAAAgGGACTGAAAAAACCTTACAACCCAATTCTGGGTGAAACCTACAGATGTCAGTGGCTTCATTCGAAGACCAATAGTAAGACGTTCTACATTGCCGAACAGGTGTCCCATCATCCTCCGGTGTCTGCCTTCTATGTAAGTAACAGAAAGGATGGGTTTTGCCTCAGCGGAAGCATCCTGGCCAAATCAAAGTTTTATGGTAACTCTTTATCTGCCATTCTGGATGGAGAAGCCAGACTGACCTTCTTGAACAGAGGGGAGGATTATGTTATGAATATGCCATATGCTCATTGTAAAGGAATTCTGTACGGTACAATGACCTTGGAGCTCGGAGGTCAAGTAAACATCACCTGTGAGAAAACAGGATACAGCTCTTTGCTTGAATTCAAACTGAAGCCGTTTTTAGGCAGCAATGACAGTGTTAACCAAATCTCTGGAAAAATCAAACTTGGGAAGGAAGTGCTGGCTACGCTGGAGGGACACTGGGATAGCGAAATCTTCATCAACGACAAAAAGACAGGCATCTCTGACACCTTCTGGGACCCCACCCCCGAGCTGAGGCAGAGCAGGCTGATGAGATGCACTGTGGCGCCGGAGGAACAGGGGGACTGGGAGTCAGAGAAGCTTTGGCAGCATGTGACCCGCGCTATAAACAACAAAGACCAGACTGAGGCCACGAACGAGAAGTACATCCTGGAGGAAGTACAGAGGAAGGCCGCCCGGGAGCGCAAGGCAAAGTGTGAGGAGTGGAGCCCCACCCTGTTTGAGCAGGACCCCATTACAGGAGAGTGGCATTACAAATATGCAGATACCCGCCCATGGGATCCTCTGAATGATATGGTTCAGTTTGAGAAAGATGGCTGGGTCCAGACAAAAGTCAGGCACAGGACACCAATGGTCACCGTTCCTAAACGAAAACGCAAGCAAAGTGATAAGCCCAAAAGTGCGGAGAGTGGCTGTTCATCTCCGGAACCAGATCGACACGATTCGTCGGGTAGTGAAAGACACAAAACCAAGCACAGTGCCCGGCTAAGGAAAAAAGGAACAGACCTCAATGAACTTCAAAGTGCCATTGATTCTATTAAACGCACACAAGAGGACATTAATAGGAGCATCACGGCGCTGCGCAGCCGAGCCCTGGCGCCTCATTCGGAGAGTGGCTTCCTGCAGCAGAGGGATTATGTCATCATCTTTCTTCTCATCCTCATCCAGATCTTCATCAATTTCATCTTCAAGTAGCCCTCGGGGCTGCGGCTCCCAAGCAAAGGGCTACAGGGAGGAAGAACATTCCTGAAAGTGCAGACCTGAAGCTTCCTCGTCCCTTGTCATTTGAAGCCAATCACAAACTGTcccataagaaaataaatacaaacactacacacacacacagacgagACCCAGATAACGAGACTTTGTGAGGAAGTGGACTCCAGCCTCGTTCTGCCAGCATCtgaataaatcatatttattctcATTGTAATAACTGGCTGTTCCATATATTTCAATGCCAAGAAGGTACACAATTGTATACACTGAATTATTTTGGAAGTTGTGAAATTGTTCCAAAAATAACCCTTTTGACTGAAAACGGTAGTGAATGAATTTATTGAAAAAGGACAgtttcttgcatttttatttaaggtAGCTGGTGTCCGAGAACATGCTTTTCTTTGGCATGAACTGGAGATGCCTCTCACCAAGGTTTGGATAGGACCGGGCTGCAATACCCAGGAAAGATGCAAGGCCTTCTTTAACAGTGTTGTGAGCATTAGGCCACAGGAAACGTTTTACAGTGACGCGGTTTTGACCTTTCCTGtatgttttatgctttttttaacGGGGTGGGGtcggg

Function

GO: NA

KEGG:

id description
K22285 OSBPL8, ORP8; oxysterol-binding protein-related protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140035 lncRNA downstream 2700 15881130 ~ 15896843 (-) False AMCG00006719
TU139944 lncRNA downstream 156828 15742446 ~ 15742715 (-) True G111765
TU139937 lncRNA downstream 170010 15728613 ~ 15729533 (-) True G111759
TU139912 lncRNA downstream 240131 15657998 ~ 15659412 (-) True G111736
TU139903 lncRNA downstream 341342 15557943 ~ 15558201 (-) True G111730
TU140185 lncRNA upstream 934536 16862677 ~ 16862967 (-) True G111940
TU140191 lncRNA upstream 970278 16898419 ~ 16901537 (-) True G111945
TU140192 lncRNA upstream 970278 16898419 ~ 16901537 (-) False G111945
TU140193 lncRNA upstream 970278 16898419 ~ 16899893 (-) False G111945
TU140194 lncRNA upstream 970278 16898419 ~ 16901537 (-) False G111945
AMCG00006719 mRNA downstream 2674 15891253 ~ 15896869 (-) True AMCG00006719
AMCG00006716 mRNA downstream 29606 15849921 ~ 15869937 (-) True AMCG00006716
AMCG00006714 mRNA downstream 50766 15846231 ~ 15848777 (-) True AMCG00006714
AMCG00006715 mRNA downstream 134267 15756282 ~ 15765276 (-) True AMCG00006715
AMCG00006717 mRNA downstream 160095 15735298 ~ 15739448 (-) True AMCG00006717
AMCG00006722 mRNA upstream 104278 16032419 ~ 16039388 (-) True AMCG00006722
AMCG00006723 mRNA upstream 123225 16051366 ~ 16061810 (-) True AMCG00006723
AMCG00006734 mRNA upstream 788134 16716275 ~ 16783557 (-) True AMCG00006734
AMCG00006735 mRNA upstream 872705 16800846 ~ 16835040 (-) True AMCG00006735
AMCG00006736 mRNA upstream 932966 16861107 ~ 16861777 (-) True AMCG00006736
TU139946 other downstream 146308 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 1145573 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 1145573 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 1535121 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 2396315 13455432 ~ 13503228 (-) True AMCG00006663
TU140351 other upstream 1704750 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 2411129 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 3705096 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 4307715 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 4925916 20854057 ~ 20949836 (-) False AMCG00006813

Expression Profile