RNA id: AMCG00006722


Basic Information

Item Value
RNA id AMCG00006722
length 3210
RNA type mRNA
GC content 0.41
exon number 5
gene id AMCG00006722
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 16032419 ~ 16039388 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACTGCAATGTAGGCTGGTGTTAAATGCAACCGATCAGCAGGTACAGCATTAAGCAAGACCTTGGTAGAATGATGTTGGTGCAAACTTTGATTATAATCTGTGAAAAGGGCCAAGAATGAGAGTCCTTTTGTGTTGTAAAAATAGTTCAAACTTTTCTTTTGACTGAGTTGATGCCAGAGATATTTAGTCTTTCTGAATGTTGCATATTTACTGTAATGGAATGCATTGAAGAGTGAATAGCGTTTTGTAGACTGAGAGAGTCACAAAGTGTTGAAATGCACCAAGGATTTTTGCTTTCCCAGGGAGGGGTAGTAAACTTAGATGTACTAGTCTGTTAGATGTATAGACCTCCACAACATTATACTATTGAAGACTACTGAATCCATTGTCCAAATATGTAGACTTTAGGGGTTATATTtctagggaaaaaaaaaaatgctttcaggaGTGGGGTCTATTTGCAAACAAACTAATATGGAACCACAGATTCCGAgcttaaattatattgtaacaaATTTTATCTTGCTTAAATTGGCAGAAATTTTGGAGAGCGGCAGTTCCGCATGCAGGGATTAAGCAGTTTTATTAAAGTTGACTGACTTTGAATCCCACAGCGAAATGGCATGTGCACATGGATCTGTTGTCCTAACGCCACTAAGAATAAGGCCAAACACTACATTCTTGTATGGTTTAAgaatgtaaaatttaaaattctCCATGGTTTTCTAGATTGTTGCCAAAATGCATTGTGTACACAGTATACAAGTTTCTTATTACTGGTGACTTGTATAGAATGAGGAAGGTGATTCAGCCAGAAACCGGAAGGACTTGTTAACCTCAAACTTCCTACTTGAGAAGCACCTCCATTTAAGCACGGTTGTACCTGTTCTTTTTGCCTCTTCAGTGTCAAAATGCCAAACTGGGGAGGTGGAAACAAATGTGCAGCCTGTCAGAGGACCGTGTACCACGCTGAGGAGGTGCAGTGTGATGGGAAAAGCTTCCACAAATGCTGTTTTCTCTGCATGGTGTGCAGAAAGGGTCTAGACAGCACCACCCTGGCCATTCATGACACGGAGATTTACTGCAAGTCCTGCTATGGGAAGAAGTACGGACCGAAGGGCTATGGCTATGGCCAGGGGGCTGGGACCCTCAACatggacagaggagagagactGGGCATCAAGCCAGAGGAaactCAGGATCATAAACCAACCACAAATGCCAACCCCTCCAAGTTTGCCCAGAAGTTTGGAGGCTCTGACAAGTGTGCCAGGTGTGGAGAGTCTGTTTATGCTGCGGAGAAAATCGTGGGAGCAGGAAAGCCCTGGCACAAAAACTGCTTCCGCTGTGCcaagtgtgggaagagcttggAGTCAACGACTCAGAccgagaaggagggagagatcTACTGCAAAGcttGTTATGCTAAGAATTTTGGACCCAAAGGATTTGGGTACGGCCAGGGGGCTGGAGCCCTCGTTCATGCTCAGTGAAAATGCCTTCTGATGATCTTCGAAGATAAATAGCTTTGTATATTACTCTGACTGTGAAACCCTTTGTTCAAACGCATACCTTTTAACTGGGAGAGTGGGGGTTCCTGTACAAAATGAAGGCtgactttttctttctattttgcaATGAATAAATCTTTTCATACTGTACAATACTTTGTGTATTTAGGACCCAGCTGTACACCTTTGCTAACACTATCCATGGTTCGTAGTTCTTGAAAGTTTTATTCATCTTAAAGCACAATATATTGGGACCCATTCCATTGAATATTGCTGCTTGTCTGTTCAAGCTCTCATGTACATCCTCTAGTATGAGATAAGTTAGTAAGAGTTGTGCACTGTGATTGAGAgaatttaacataattaaaagggCTTTGGTGGAGGTCTAATTTGAAAGAATGCATGCATCTAGTAATAACCTCTCATAAAACCCTTCACACACGTGAGGATTAACATCTGCTGCAtgcccagtttttttttttttttttttttttccttctcctctaACTGCGAGTTCCCTGCTGCTTTCCAATTGTCATAGtggtaattaaaatgaaggctGCAGTTCACTGGGTGCGTCACCTGGGTTCTTTAATTGGCGATTTCCAGTAGGCACACACAGCAGTGGCCATTGAGGGTGCACAATGCAACATGGAACACAGCTTAACATCATTACACCATAGGCCAGGTTTATTGgattaatttacaaaaccaaaacaaaaactgacatGACTTAAGGAGAGCTATTTTAGAAGTAACATTTGCAGGTTCAGCTTGATTTTTCTCCACAATGTAGTACAACAAAGGTCCTGAAAGTAAAGCAATACTTGGCACAGAAATGAAGGGGTTTCTATCGAATTAGTGAAGTATTCTGtgtgatgtaaaaataaaggaCTGGATACAGCAGGGAGGACAGAATTCAATGTGGAACCTCAGCGTATTGTTCCAAGTGCAAAATTCAGAGCCTTGAATAAAGAActgatgttttcaaaatatactgGAGTGTGTTGGGCAAACTTTGTAACCGGAAGAGCCGTTGTGGCTCAGTGTGCACCGAGGGGCATTCCCTGAAGCACAAGGGAAGACTGGATTAATTAAatctgcaaaatatatatatgggttAAATTCCAGTGCTTCTACGGTTCAGTAATTAATGTTGCTGGATCAGTTCTGCCAACAAGTGTCCCTTTTATAATATCCACATAAATAAGCAGGCCTTTACTCACGTCTTCATGATCAACTATGACTTTGCAACCTGTAGTCAGAAGCATAATGTTTAAACCTGTAGCCAGTAGCTGGGACCTGTGACAGTTAATATTCAAAAGGTGCTTCTCCCCACCTTTTCCgttttgtttaaaaaggggGAGCCAAGCTTCGGTAGAGAGATCCCACACCATTCCTTTCGATTGAAACTGTCAGCAGTagccctttaaaaacaaaccaataacaAGCACAGGGACAGATCCAAGCAACGATGTAAATCCCCATATATGACGAAGTGTGCTGTGCCCTTCCTGCCTTCACTCTTTCTAGCAAGTGTCCCAGATTTCTGCATGTAGACAGAATTAATAAACCACGAAAGAACAGGTCAACGTGAATCTATGTAATGATTTTGCTTGCTTTTGCTTTACAATTTTACATCCAGTGGTTTAACAAACTCGGTAtacgacaaaaaaaaaaaaaaaaaagtaaagaaa

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09377 CSRP; cysteine and glycine-rich protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140035 lncRNA downstream 135576 15881130 ~ 15896843 (-) False AMCG00006719
TU139944 lncRNA downstream 289704 15742446 ~ 15742715 (-) True G111765
TU139937 lncRNA downstream 302886 15728613 ~ 15729533 (-) True G111759
TU139912 lncRNA downstream 373007 15657998 ~ 15659412 (-) True G111736
TU139903 lncRNA downstream 474218 15557943 ~ 15558201 (-) True G111730
TU140185 lncRNA upstream 823289 16862677 ~ 16862967 (-) True G111940
TU140191 lncRNA upstream 859031 16898419 ~ 16901537 (-) True G111945
TU140192 lncRNA upstream 859031 16898419 ~ 16901537 (-) False G111945
TU140193 lncRNA upstream 859031 16898419 ~ 16899893 (-) False G111945
TU140194 lncRNA upstream 859031 16898419 ~ 16901537 (-) False G111945
AMCG00006720 mRNA downstream 104278 15899543 ~ 15928141 (-) True AMCG00006720
AMCG00006719 mRNA downstream 135550 15891253 ~ 15896869 (-) True AMCG00006719
AMCG00006716 mRNA downstream 162482 15849921 ~ 15869937 (-) True AMCG00006716
AMCG00006714 mRNA downstream 183642 15846231 ~ 15848777 (-) True AMCG00006714
AMCG00006715 mRNA downstream 267143 15756282 ~ 15765276 (-) True AMCG00006715
AMCG00006723 mRNA upstream 11978 16051366 ~ 16061810 (-) True AMCG00006723
AMCG00006734 mRNA upstream 676887 16716275 ~ 16783557 (-) True AMCG00006734
AMCG00006735 mRNA upstream 761458 16800846 ~ 16835040 (-) True AMCG00006735
AMCG00006736 mRNA upstream 821719 16861107 ~ 16861777 (-) True AMCG00006736
AMCG00006737 mRNA upstream 1020975 17060363 ~ 17072397 (-) True AMCG00006737
TU139946 other downstream 279184 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 1278449 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 1278449 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 1667997 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 2529191 13455432 ~ 13503228 (-) True AMCG00006663
TU140351 other upstream 1593503 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 2299882 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 3593849 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 4196468 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 4814669 20854057 ~ 20949836 (-) False AMCG00006813

Expression Profile