RNA id: AMCG00006723


Basic Information

Item Value
RNA id AMCG00006723
length 2580
RNA type mRNA
GC content 0.59
exon number 11
gene id AMCG00006723
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 16051366 ~ 16061810 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCCCACTGAAGAACGAGGCATCGCCAGCCATGCACCACAGAAGAGGATGCACCCCAGAACAGATTCACATCACCCCCAGCAAGCACCTGGACCGAAACCAGGCCGAGCCCTGGACCCCAACAGCAAACTTGAAAATGCTCATCAGCGCTGCTAGCCCTGACATCAGGGACCGCGAGATGAAGAAGAGCCTTTTTCGCccaattgaaaatgaaaaggacGAGGTTCTGGATGACCCAAGCCAGTTCGATGTCATGGATGACTGTAACCCAGATGAGTTTGAGAAGCAGCGGCCTAGCAGGAAGTTGAAAAGCCTGGGCCTTCTCTGCCAGAAGTTTCTTGCCCTTTATCCTGACTACCCACTGTCTGCAGAGAAGACCAACATTTCTTTAGATGAGGTGGCCATGAGTCTCGgAGTGGAGCGCAGGCGGATCTATGACAttgtcaatgtcctggagtctCTAATGCTGGTGAGCAGGGTGGCTAAGAACCAGTACTGCTGGCATGGGCGGCACCAGCTGTGCCAGACCCTCGAGGACCTGCAGAGCACGGGCAGGCGGCAGCGCTACGAGGAGCAGATGGCACAGATCCGTGACAAAGACGTCAGGCCGGCCGAGCCGCAGAGGAGGGACTACCTCCCCGAGCCCCCGGAGGACGGCGGCGACTCCGACATCGGGTCTGGGTCAGCCAACAGAAGGAAAGACAAGTCATTGCGGATCATGAGCCAGAAATTCGTTATGCTGTTCCTCGTGTCGAAGACCAGGATTGTTACCCTTGATGTTGCTGCTAAGATCCTTATCGAAGAGAGTCAAGACGCTACCAACCACAGCAAGTATAAAACTAAGGTCCGCCGGTTGTATGACATCGCCAACGTCTTGACCAGCCTGGGCCTAATCAAGAAGGTCCATGTCAAAGAAGAGAGAGGCCGGAAACCTGCTTTTAAATGGATCGGCCCTGCTGAGTTTCAGAGCTCCGGTGGTAAGAGAAGCTACCCCAATAGCCCCATTTTTCAATTCCCAGAAGATGTGGAGGCAGTGGCCACAATAGATAGCTTACCAGCACCCCACCCTCAGCTCCCGGGAAAACCGAGACTGGCGCGCCACTCCTCCTTCCACATGCTGTCAACTTCTGTCGCAACGCAGCGGGCCATCAGCTCCGCCCCCAGCAGCCCACACAGAGACCGCAAGGCTTTGACTCCTGAGCCTGTGGATTATTCCCGAAAGACAGCGGTGGTGTGTAAACTGCAGTTTGGAGAGAATTTAAGATCCCAGCACTGTGGAGGCCCGAAGAGCAGCTCTGttcctccctctcccacccTCGCCCCGGTACACGTTCCCAGCTCTCCAGACTCTCATTACGAATCTTTCCCAAAGTCCCCTTCCCAGCCTGCCTTTTCCTTGCCACGGCCGGAGCTCCTGTTACCCCGGTTTTATCCGAGCACTGCCAAAACCTGCGCACCCATCCTGGCGATGTCCTCGAAGAAAGCGTATGAGGAGGGAGATCCCCAACCCCATTCTCCCTTGGTTTACTTCCAAAACCTGTCCCCCGCGTCCATGGTCATGCTGTGTGGGAATGGCGGTGTCTGCGAGGGTGTGGAAAGGGTTGAGACGGGCACGGAAGGTCATAGGTCACTGGGCGCAGACCAGATATCTCAAGCGCCCCAGCAGCGCAGCGTGGCAAAGAGACGGCTCGCTGGCGACGCAGAAGAACCGACGGGCAAAAGGGACAGGTTGACGCATAGTGAGGCGGAGAACTCTCAAGAGAAGAGGTTGAGAGGAAATAAGGAGCCAGACTGTACCTCAAACACTGTGAAGACCCCAGGCTGCCGCTCGGACCCCAGGCCGCCGTCacaagagggagggaggtgcaCCGTCCCCTCGGAGGAGATGAAGCCTCGCAGCCCTTTCGAAGAGGTGGAGACTGGAAGGCCGGGTCCTCAAGATCTAGCCCCGCCTTCGCACTACCTGTATGTGCCCACCTCTGCAGGTCTGAATGGTCTGAATGGGTTGAACTTCCTGCTCCCCGCGGGACACGGTGCCGGCGGCCTGACTCTCTCTCCCAACGGCTTGCCCGCTCTGGCCTTGCCATACGTGGTGGTGCCCTCCTCTGCCCTCTCCCCCTACCCACTCCTTGCCAGCGGCCTCCCGGGTGCCAACGCTGATCTGCACGGCAAAGGCACGATCAGTTTCAACATGCCGGCGATGGTGTCTCCGGCGCGCTTCGTGATCGGAGCCCGGCCTGCTCCCGCCCCCGCGACCCCCGAATTCTCCCCCAGCCACCAGGACGGCCGGCTCCCTGCTTTGGGATACTCCAGTCCGGAGGAACCCCGGCCCCTGAGCGCGGGGAACCCCGACACACCAGCTACACTCGGACCCCTGTCGGCCTTCCTCCGATTACAGCCACAGCCACAAACACCACTGACTCCAAAAGAGGCTCGCATGGCCTACCCCGAGGCCTTCTTCCAGACCCCAGGGACGCTGGGTTCTGCCGTGTCCTCCATTGCCCGGAAACGGGGCCACACCAGAGGAGCGAGCTCGGCCCAGAGGAGGCTGGATATTGGCAACAACACCGCGAACTAA

Function

GO: NA

KEGG:

id description
K09391 E2F7_8; transcription factor E2F7/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140035 lncRNA downstream 154523 15881130 ~ 15896843 (-) False AMCG00006719
TU139944 lncRNA downstream 308651 15742446 ~ 15742715 (-) True G111765
TU139937 lncRNA downstream 321833 15728613 ~ 15729533 (-) True G111759
TU139912 lncRNA downstream 391954 15657998 ~ 15659412 (-) True G111736
TU139903 lncRNA downstream 493165 15557943 ~ 15558201 (-) True G111730
TU140185 lncRNA upstream 800867 16862677 ~ 16862967 (-) True G111940
TU140191 lncRNA upstream 836609 16898419 ~ 16901537 (-) True G111945
TU140192 lncRNA upstream 836609 16898419 ~ 16901537 (-) False G111945
TU140193 lncRNA upstream 836609 16898419 ~ 16899893 (-) False G111945
TU140194 lncRNA upstream 836609 16898419 ~ 16901537 (-) False G111945
AMCG00006722 mRNA downstream 11978 16032419 ~ 16039388 (-) True AMCG00006722
AMCG00006720 mRNA downstream 123225 15899543 ~ 15928141 (-) True AMCG00006720
AMCG00006719 mRNA downstream 154497 15891253 ~ 15896869 (-) True AMCG00006719
AMCG00006716 mRNA downstream 181429 15849921 ~ 15869937 (-) True AMCG00006716
AMCG00006714 mRNA downstream 202589 15846231 ~ 15848777 (-) True AMCG00006714
AMCG00006734 mRNA upstream 654465 16716275 ~ 16783557 (-) True AMCG00006734
AMCG00006735 mRNA upstream 739036 16800846 ~ 16835040 (-) True AMCG00006735
AMCG00006736 mRNA upstream 799297 16861107 ~ 16861777 (-) True AMCG00006736
AMCG00006737 mRNA upstream 998553 17060363 ~ 17072397 (-) True AMCG00006737
AMCG00006740 mRNA upstream 1082889 17144699 ~ 17271736 (-) True AMCG00006740
TU139946 other downstream 298131 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 1297396 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 1297396 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 1686944 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 2548138 13455432 ~ 13503228 (-) True AMCG00006663
TU140351 other upstream 1571081 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 2277460 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 3571427 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 4174046 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 4792247 20854057 ~ 20949836 (-) False AMCG00006813

Expression Profile