RNA id: AMCG00006728


Basic Information

Item Value
RNA id AMCG00006728
length 339
RNA type mRNA
GC content 0.49
exon number 2
gene id AMCG00006728
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 16695465 ~ 16698111 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTACGTCAAAATCCACCTGATGCAGAACGGCAAGAGactcaagaagaagaagacgacAATCAAGAAGAACACTCTGAACCCCTACTACAACGAGTCGTTCAGCTTTGAAGTGCCATTTGAACAAATCCAGAAAGTGCAGGTTGTTGTGACTGTTCTGGACTATGACAAGATCGGCAAGAACGATGCCATCGGCAAAGTGTTTGTGGGCTACAACAGCTCTGGAACCGAGCTGAGGCATTGGTCAGACATGCTGGCCAATCCCAGGAGACCCATCGCACAGTGGCATGTCCTAAAGCCCGAGGAGGAAGTAGAAGCTCAGCTCTCAgtcaagaaataa

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139968 lncRNA upstream 825664 15849921 ~ 15869801 (+) True G111788
TU139965 lncRNA upstream 910703 15784519 ~ 15784762 (+) True G111786
TU139943 lncRNA upstream 952813 15742438 ~ 15742652 (+) True G111764
TU139900 lncRNA upstream 1157624 15537429 ~ 15537841 (+) True G111727
TU139899 lncRNA upstream 1218751 15476154 ~ 15476714 (+) True G111726
TU140129 lncRNA downstream 16707 16714818 ~ 16722048 (+) True G111898
TU140142 lncRNA downstream 81291 16779402 ~ 16804582 (+) False G111909
TU140140 lncRNA downstream 102734 16800845 ~ 16810470 (+) True G111909
TU140186 lncRNA downstream 165045 16863156 ~ 16863355 (+) True G111941
TU140403 lncRNA downstream 1516682 18214793 ~ 18215048 (+) True G112106
AMCG00006727 mRNA upstream 18223 16658295 ~ 16677242 (+) True AMCG00006727
AMCG00006726 mRNA upstream 270259 16377780 ~ 16425206 (+) True AMCG00006726
AMCG00006725 mRNA upstream 339041 16354450 ~ 16356424 (+) True AMCG00006725
AMCG00006724 mRNA upstream 350449 16335110 ~ 16345016 (+) True AMCG00006724
AMCG00006721 mRNA upstream 664581 15999396 ~ 16030884 (+) True AMCG00006721
AMCG00006729 mRNA downstream 200170 16898281 ~ 16901493 (+) True AMCG00006729
AMCG00006730 mRNA downstream 205409 16903520 ~ 16940186 (+) True AMCG00006730
AMCG00006731 mRNA downstream 242151 16940262 ~ 16947460 (+) True AMCG00006731
AMCG00006732 mRNA downstream 256777 16954888 ~ 17022710 (+) True AMCG00006732
AMCG00006733 mRNA downstream 328211 17026322 ~ 17037135 (+) True AMCG00006733
TU139270 other upstream 3652017 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 7128114 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 7971399 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 8518679 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 9040271 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 4239386 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 4350225 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 4444754 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 7334002 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 7606668 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000019_04447561_04470707.mRNA True 2356 mRNA 0.45 12 CI01000019 4446897 ~ 4470818 (-)