RNA id: AMCG00006731



Basic Information


Item Value
RNA id AMCG00006731
length 1062
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00006731
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 16940262 ~ 16947460 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCCTGTTTTCTTCCAGTCTGCGAGTCTTGTATCGAACCCATTCCCACATGCAATGGCGGTGAACTTCTGGCTGTTGATCTCAATACCACCCATCGCTGTTGTCCTCAATATCAATGTGTCTGTGATGTGAGCCTGTGCCCAAGAACTAACACTGAATGCTCTCCTGGAACGGCTCTGGTGAAGAAGACTGTTCCTGGACACTGCTGTCCTGAGTGGCAATGCGAATGCAGCTGTCAAAATAATTCTGTCCCATTCTGTCAGGTGGGAGAGATTCATGTTGAGGACCCGGACTTTACCAGTGCCTGTGGTTGCACTCAGTACATTTGCAAGAAGGCAGACGTGTGCCTGTTTCAGGGAGTCACTGTGCTGAGCCCAGGCCAGTCCATGGTCCAGTACTTTGAAGGGGACCTCTGTTACACAGTGCAGTGCCTACACGAGATGGATATCGTCACAGGTTTCCATGCTATGGAAGTGTCCACGGTTAACTGCTCAGAGAAATGTGGAGCTCATCAAGTTTATGTTCCGTCGTCAGACTCTCACATCTGTTGTGGCTCCTGCAAGAATGTGTCGTGCACTTTCACAAATGAGAACGGCACCATCGATGTCTACAGGGCAGGGATTACATGGGTTTCAAACTGCACTAGATATGATTGTGTGGAGACTGCGGTTGGGGCTGTGATACTTGGCTCCGGAATTGTTTGCCCACCTTTCAATGAGACTGAATGTATACAGAACGGGGGCACCGTGCAGAGCTTCATCGACGGCTGCTGCAAGACATGTAAGGATGATGGTCGAACCTGCAAAAGAGTGACAATCAGAACCACAATCAGGAAAGATGACTGCAGAAGTGGCACTCCTgtaaCAGTCTACTCTTGTGATGGGAAATGTCCTTCGGCaaccattttcaatttcaacatTAACAGCCACGCACGGTTCTGCAAATGCTGCCGAGAAAATGGCTTACAAAACCGCACTGTGCAGCTCTACTGCACAAGAAATGGCACTTCAGTTGACTACACCTTCCAGGAGCCAATGGATTGTACCTGTCAGTGGAATTAG

Function


GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU140186 lncRNA upstream 76907 16863156 ~ 16863355 (+) True G111941
TU140140 lncRNA upstream 129792 16800845 ~ 16810470 (+) True G111909
TU140142 lncRNA upstream 135680 16779402 ~ 16804582 (+) False G111909
TU140129 lncRNA upstream 218214 16714818 ~ 16722048 (+) True G111898
TU139968 lncRNA upstream 1070461 15849921 ~ 15869801 (+) True G111788
TU140403 lncRNA downstream 1267333 18214793 ~ 18215048 (+) True G112106
TU140493 lncRNA downstream 1746418 18693878 ~ 18694311 (+) True G112181
TU140495 lncRNA downstream 1747699 18695159 ~ 18745217 (+) True G112182
TU140496 lncRNA downstream 1747699 18695159 ~ 18744463 (+) False G112182
TU140528 lncRNA downstream 1953479 18900939 ~ 18903543 (+) True G112207
AMCG00006730 mRNA upstream 76 16903520 ~ 16940186 (+) True AMCG00006730
AMCG00006729 mRNA upstream 38769 16898281 ~ 16901493 (+) True AMCG00006729
AMCG00006728 mRNA upstream 242151 16695465 ~ 16698111 (+) True AMCG00006728
AMCG00006727 mRNA upstream 263020 16658295 ~ 16677242 (+) True AMCG00006727
AMCG00006726 mRNA upstream 515056 16377780 ~ 16425206 (+) True AMCG00006726
AMCG00006732 mRNA downstream 7428 16954888 ~ 17022710 (+) True AMCG00006732
AMCG00006733 mRNA downstream 78862 17026322 ~ 17037135 (+) True AMCG00006733
AMCG00006739 mRNA downstream 154262 17101722 ~ 17120725 (+) True AMCG00006739
AMCG00006738 mRNA downstream 189697 17137157 ~ 17143440 (+) True AMCG00006738
AMCG00006742 mRNA downstream 459569 17407029 ~ 17466135 (+) True AMCG00006742
TU139270 other upstream 3896814 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 7372911 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 8216196 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 8763476 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 9285068 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 3990037 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 4100876 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 4195405 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 7084653 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 7357319 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile