RNA id: AMCG00006734


Basic Information

Item Value
RNA id AMCG00006734
length 1242
RNA type mRNA
GC content 0.61
exon number 9
gene id AMCG00006734
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 16716275 ~ 16783557 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGACGGGGGGGTTCAGATCGAGCACCACGACGGACTTTCTGGAGGAGTGGAAAGCCAAAAGGGAGAAGATGAGGGCTAAGATCCAGGGAGAGGTGGCGGCTGCCGGGGGGAGCGGCAACAGCAGCAACCCGGCCGCGTCTCCCTCACTGGGGCCGGGCAGCGAGAGCCGGAGTTTCCCCGCCGCCAACAGCGAGCTGCACAACCACGGCGGCGCCTCCTTTAACTGCGCCGCTTCACACCCGGGGAGCCGatcctccacctccacctccaccgGCCCGAGGAGGCCAGAGGAGGACCCGCACCTGCCCACCGCCGGCCGGGCAGCCGATCCCCCGGGGAGCAGCCTGAAGAAGCCCCCGGTGGCGGAGAAGCTGCCCGCCGGCGCCCCGCAGTCGGACTGCAGCGGGGAAGTGTGTGTCGAGAGCGAGAAGGAGGGCTCCCCGTCCCCGGCGGCGGGCTCCGGCAAAGCCAAGGAGAAGGGCAAGAGCTCGGGCCCCAGCGCCAGGAAGGGCAAGGGGCAGATCGAGAAGAGGAAGCTGCGGGAGAAGCGCAGATCCACAGGTGTCGTCAGCATACCGTCCAACGAGGTGAGTGAGGCCCGGGGTCTGGCAGCGGTGCGGCTGTCAGGTGGCGAGGCACGTCAGCTGCCCGGGCATGGGGCGAGTTGTTTCACTGCCTCGGCAGGAAAGGACAAGTACCCAGAGAACAAAAGTCTCGATGAGCTGGAGGATGACGACGGCACGCAGAAGGACCGGAAGAGGGAAGATGCCATCACACAGCAGAACACGGTGCAGAATGAAGCCCTGGCCTCTGACCCCAGCACTGCTCACCTAATACAGCTGGAGAATGCCAAGATAAcGTCACAGCGAAAGACACATCTAAATCTGTATCAAGCCGATATAAAAGGTCCAGCATCCGAGGAGGAGGCCACTGGGAACAGTAGGTACCCAGGGCGACCGGAGCGCTCAGGCTATGGGCGTCATGGCAGGGATGCCAACGCACTGGGCTCTGGAGCCCTGGAGAGGAGAATCGAGGAATTGGAAAGGGAACTTGCTAAAGAGAGGCAGGAAAACACACGAATGTTGAGAGCCCATCAAGACAAAGATGAAGTGATAGGCAAGCTGAGGGAAGAGATTGACCTACTAAATAGGGATCTTGATGACATAGAGGATGAAAATGAACAACTGAAGCAAGAAAATAAGACCCTCCTGAAGGTTGTAGGTCAGCTGACCAGGTAG

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140035 lncRNA downstream 819432 15881130 ~ 15896843 (-) False AMCG00006719
TU139944 lncRNA downstream 973560 15742446 ~ 15742715 (-) True G111765
TU139937 lncRNA downstream 986742 15728613 ~ 15729533 (-) True G111759
TU139912 lncRNA downstream 1056863 15657998 ~ 15659412 (-) True G111736
TU139903 lncRNA downstream 1158074 15557943 ~ 15558201 (-) True G111730
TU140185 lncRNA upstream 79120 16862677 ~ 16862967 (-) True G111940
TU140191 lncRNA upstream 114862 16898419 ~ 16901537 (-) True G111945
TU140192 lncRNA upstream 114862 16898419 ~ 16901537 (-) False G111945
TU140193 lncRNA upstream 114862 16898419 ~ 16899893 (-) False G111945
TU140194 lncRNA upstream 114862 16898419 ~ 16901537 (-) False G111945
AMCG00006723 mRNA downstream 654465 16051366 ~ 16061810 (-) True AMCG00006723
AMCG00006722 mRNA downstream 676887 16032419 ~ 16039388 (-) True AMCG00006722
AMCG00006720 mRNA downstream 788134 15899543 ~ 15928141 (-) True AMCG00006720
AMCG00006719 mRNA downstream 819406 15891253 ~ 15896869 (-) True AMCG00006719
AMCG00006716 mRNA downstream 846338 15849921 ~ 15869937 (-) True AMCG00006716
AMCG00006735 mRNA upstream 17289 16800846 ~ 16835040 (-) True AMCG00006735
AMCG00006736 mRNA upstream 77550 16861107 ~ 16861777 (-) True AMCG00006736
AMCG00006737 mRNA upstream 276806 17060363 ~ 17072397 (-) True AMCG00006737
AMCG00006740 mRNA upstream 361142 17144699 ~ 17271736 (-) True AMCG00006740
AMCG00006741 mRNA upstream 543072 17326629 ~ 17327076 (-) True AMCG00006741
TU139946 other downstream 963040 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 1962305 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 1962305 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 2351853 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 3213047 13455432 ~ 13503228 (-) True AMCG00006663
TU140351 other upstream 849334 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 1555713 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 2849680 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 3452299 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 4070500 20854057 ~ 20949836 (-) False AMCG00006813

Expression Profile