RNA id: AMCG00006735


Basic Information

Item Value
RNA id AMCG00006735
length 5239
RNA type mRNA
GC content 0.44
exon number 26
gene id AMCG00006735
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 16800846 ~ 16835040 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTCTTCTCTTTGTCTTGCAGGCCTGCATAGATGACAATGTGGATATGGTGCAGTTTCTGGTCGAACATGGAGCCAATATCAACCAGCCTGATAACGAAGGCTGGATACCACTGCATGCAGCTGCTTCCTGTGGATATCTTGATATAGCTGAATATTTAATTAGTCAAGGAGCTAATGTTGGAGTTGTCAACAGTGAAGGGGAAACTCCGCTTGACATTGCAGAAGAAGAAGCAATGGAGGAACTTCTGCAAAATGAAGTGAATCGTCAAGGAGTTGACATTGAAGCGGCtcggaaggaggaggagagaattATGCTGCGTGACGCGCGGCAGTGGTTGAATAGCGGCCAGATCAACGATGTCCGACATGCCAAATCTGGGGGTACAGCATTGCATGTTGCGGCTGCTAAAGGCTATGCAGAGGTTTTAAAGCTTTTAATCCAGGCGGGGTATGATGTAAACATTAAAGACTATGATGGTTGGACACCACTCCACGCTGCTGCCCATTGGGGTAAAGAGGAAGCCTGCCGTATTCTAgGCCAAACAGCCGTTGATGTAGCAGATGAAGATGTCCTTGGTTATCTAGAAGAAttgcaaaagaaacaaaatctgCTTTTGAGTGAGAAACGGGATAAGAAGTCTCCTTTGATTGAGACGACGACAACAATGGACAATAACCAATCACTTAAACCACTCAAGAACAAAGAGACGCTGTTGATCGAGCAGGAGAAGCCTGTACCCCGCATCGAGTCTCTGGAGCAGGAGAAGGCcgacgaggaggaggaagggaagaAGGACGAGTCCAGCTGCtccagtgaggaggaggaggaggaggactcGGAATCTGAAACTGAAGCAGACAAGAGCAAGACTTCTGCCCCTGTAAATAACACGAACAGTACCGCAACATCGCCAACCAGCGTGACTGTATCGTCCCCAACAATCCCCACTAACCAGGTGACCCCAACCTCGCCTGTCAAGAAGATTGCTCCCCCTGCTGGTAAAGTCTCCCCAAAAGATGATGATCGGAAAGATGAGTCCCCCTCTTCCTGGCGGTCTGGCCTTCGGAAAACGGGCAGCTACGGGGCGCTGGCAGAGATCTCTGCTGCTAAGGAGGCACAGAAAGAGAAGGACACCACTGGGGTGATGCGCTCTGCCTCCAGTCCAAGGCTGTCTTCCACACTGgacaacaaagacaaagaaaagGAGAAAGATAAAGGAACCCGGTTTGCGTACGTGGCTCCTACAATACCATCCAGACGATTTGCCAGTACTTCAGATATTGACGAAAAGGAAAACAGGGACTCTGCTGCTAGTCTGGTGCGTAGTGGGTCTTACACAAGGAGGAGGTGGGACGATGACCTGAAGAACAATGAAGGAACTGCTTCCCAGAACAAAACGCCAAGCTATCAGCGAAGTACGTCCTACTCGCTAGCAATAGGCAGAAGTAGCAGTGTGAGAGATGTACCAGCTAAGTCTTCATCTGCCATCAGCTTGGATCCTAATAACACTAAACCTTGGCAGTCACCTTCATCTCAGTACCAGTCTTGCAGCATTTATAGAAGTGGCTCCTTTGGCCGGCGCCAGGATGATATGTTCAGTTCTAGTGTCGCATCCACCACCTCATCCGTTACCTCACCCACTGGCCACCCGAGGAGTCTGCTCTCAAGCGCAAGCACTACGACCAAGACCGCGACGACGACGACTCCATCGAGCTTCTCAAGCAGAAAGGGAGAAAGACTCTGGACCAACAGCAGTGGCCGTCATACCAACTATTGTAAATACTTCAGCTACTACTACATCAACCACATCCACCACTGGCACCATCGTACCTCACTCCTGTCCGGGATGAAGAATCAGAGTCTCAGAGGAAAGCCAGATCTAGACAAGCTAGGCAGTCGAGAAGGTCCACTCAGGCAAGGTGTGACCCTCACTGATCTTCAAGAAGCGGAAAAGACTATTGGCCGGAGCCGTCCAACTCCAATTCGAACTCGggaagaggagaaagaagaaaaggaaaagcaggACAAAGAGAAacaggaggagaagagagaatTGGACCCTCGAGATGATGACTACCGGTCGAAATTCCGGAGCTTTGAGGAGACTTACCAGCGCTATCGGCCATCCAGTACTTCCACAGCCACATCATCCTCCACTAGCTCTCTCTATTCGTCTAGTTCACTCAACCGGCCCAACAGTCTGTCTGGCATCACCTCGGTATACCCCAGCTACAGCAGGACTTTGTCCAGGGATACTGAGAAGGAATCTGATAAGAAGGAGGACGAGAAGGACGGAGAAGACAAGTCCGAGGACAAGTCCCAGCCCAAATCCATACGAGACAGACGGCGGCCCAGGGAGAAGCGACGGTCCACCGGAGTCTCCTTCTGGACCCAAGATAGTGATGAAAACGATCAAGAACAGCAGTCCGATTCTGAAGAAGGAACTGACCGTAATGAGCCCCAGAGCGACAGGCTTTCAAGGAATGACACTGGGTTGTCTAGCTCTTCTGGTGATCGCTATGACCACATCATTGGCCGCAGCAGAAAGCCCTACTCGAGCAGATTGGATAGAGAAGATTCAACCGATTACAAAAAGCTTTATGAACAGATTCTAGCTGAAAATGAGAAACTGAAGGCACAATTACGCGATACAGACATGGAGTTAACAGACTTGAAATTACAGCTTGAAAAGGCAACGCAGCGACAGGAGCGGTTTGCTGACAGGTCACAGTTGGAAATGGAGAAAAGGGAAAGAAGAGCTCTAGAAAGGAGGATATCTGAGATGGAGGAAGAACTCAAGAACCTTCATCAAGTAAAGCAGATTCAGACTCTGAGGCAATTAAATGAGAGATTGATCGCAGAGAATAGGGCCCTGACCAGAGTGGTGGCAAAGCTTTCAGAGTCCTGTAGCCAGCTACAGGCTGTGGACTTGTAGACCCCCTCCCATTCTTCATTACCTCTGCCCACCCATAGCCAGATGCTACCAGACTTGAAAGCAGATAACCAGAGACTAAAGGATGAAAATGGAGCCTTGATTAGAGTCATAAGCAAACTTTCAAAGTAGACCAGGTCCTGCAGCAGCAACTAATGGTATtgcacattaatattaattgcaACAGACATCAGCTACCAGGTTCCTCCTTCCATCTGCAATCACATTTGCTCTACCCCTCCACCAGCCACACCAtcctttttcattcattaaaaccCTACTAGGTGATTTTACTTAACCCTGCAGCTGCTGTCAAGACGGAACGAGTTTACAGAAATCAAACCATGATGAACGAGCGAAAGCGATTTGGCCAGGGACGCCTCGGAATATTTAACCAATAAGCCTTAGCTGTACATAAACACATGCATCGAGCTCTCAGCTGTCACAGAATAAGTTATTCAAGCGACATTTATTGTGCCACAGcctatgtgtttttgttttttgttttttttccccgtttttgtttgtttttgttcctacACCTGCTTAGaagtgttgtgtgctgtgcGATGTTCTTCTAACCACCCATGTGCCAGAGATATTTCCCTAGAAGCTCAGTGTTCACTCGGCtgtcccatttttttttttttttttttttttgaagagaCCCAAGATCCCAACCAGAATAATGGAAGTTATTGCggttttttattcaatttttaagaaaaggaaataaaaattcTCGCCATATTGAATAGGTGGACTTGGTGAAACTTAGGCTTTCACTGTATGtgcaatatgcatttatttcttaaacaaatGCTTTAATGAGTCCATTGTAAGTAGAATTATTTTCACCTCTTCTGCCTTCATTGTTcaccccctttttttttctccttttctttgtattgtaGTTGTTGGATTATACTGTGTATTCTTCACTTCATTTTAGCCGGTACTGAGTGaagctgtatatatgtattgtttgagTTTCAGACCACCACATGGCATGCATTATGCTTCCTGATGACAAACCAACCTGTTACTATTAAAATCTACAACTACagaaaaagtgtgttttaacgattttcatttattttgtagtaaGTACATTGGATGCAGTAGAGCCTCTCTCGTTAAGGAGATGGCAAGTTGAATtcagtgctgttgttttttcagttttttttttctttgtcatttttttaagtgttcaCAGTAATAAATGTGAgattaagaataatataattgcTTCACTACATTTCACACCTTgtatacagtatctttggaAGTGCTgtcccccccccttttttaacTGTAGTACTAGCCAAGATATTGTCACTAAAATCTTCGGTATTTCTAACCAGTCCTTTTACAATGTCTGTATGCACTGTTAATGCCATGTGAAGAGTCATGTAAAGTTTTGAGACGACCATTATGTCAAATAAAGACCGGAAATTGGAACATTTATTATATGCATTTCAGTGGCCTTTTAAATTTACTATAGTGAATGTTGCTATGGTTGACTGTCaggatttctttttaattattattattattattattattattattatttaccatcATGTAAAATAAGTGACTCCATACTGGCACACACTGCTGTGACGTTAAACCACTGAAGAGTTCAAAGCATTCAAaccattcaaataaattgtatattgtaaagCTTGCAGTAGCTATTGTATCCTCATTGATTGTATACTTAAATGTGAATTTATACcccttcataaaaaaaaaaagaaaaaagaaaaacaggtcaTTGtgttctattaaaaaatattttagtttggaAACCTGGGCGACTGTCCCTGTATTTTGTGGTGATTGGTTTTGTGTCGGTGTGAGGCCGTGCTCATACTACCAAGCTCAGGATTCTTGACTTTAAACACCTAAACATGCTACAGTGCGTCTGATTGTTCCTGTCGTGGATTGATTGGTATGATTGGTTTATTTGAGAGCGTAGAATTGGAGTTTGAATGCTAGTGAACAATGGGTTAAGTGGTTCCTCGGACCGTGAGACTGTTAACTCAACCCTTTGCAAATTGTGTTAGTTTTGGGTGCATGTGCAGATTTAACCTAGCTACGCATTTCtaatagtgttttatatttggtttatttattgttaaacaaaaaaagaaaaaaaaaatatatgaagtgGCTGCAGCGCTATAATTTTATTGGTAGTACCGAGCAGACCTTGTATCAGCATGAAACTAGTCGCTGAAACTATTTTGAggagggaaaacaaatgtattttgacatatacaaataaagatgaaataaagtt

Function

GO:

id name namespace
GO:0035507 regulation of myosin-light-chain-phosphatase activity biological_process
GO:0030155 regulation of cell adhesion biological_process
GO:0051017 actin filament bundle assembly biological_process
GO:0001889 liver development biological_process
GO:0072357 PTW/PP1 phosphatase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0071889 14-3-3 protein binding molecular_function
GO:0019208 phosphatase regulator activity molecular_function

KEGG:

id description
K06270 PPP1R12A, MYPT1; protein phosphatase 1 regulatory subunit 12A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140035 lncRNA downstream 904003 15881130 ~ 15896843 (-) False AMCG00006719
TU139944 lncRNA downstream 1058131 15742446 ~ 15742715 (-) True G111765
TU139937 lncRNA downstream 1071313 15728613 ~ 15729533 (-) True G111759
TU139912 lncRNA downstream 1141434 15657998 ~ 15659412 (-) True G111736
TU139903 lncRNA downstream 1242645 15557943 ~ 15558201 (-) True G111730
TU140185 lncRNA upstream 27637 16862677 ~ 16862967 (-) True G111940
TU140191 lncRNA upstream 63379 16898419 ~ 16901537 (-) True G111945
TU140192 lncRNA upstream 63379 16898419 ~ 16901537 (-) False G111945
TU140193 lncRNA upstream 63379 16898419 ~ 16899893 (-) False G111945
TU140194 lncRNA upstream 63379 16898419 ~ 16901537 (-) False G111945
AMCG00006734 mRNA downstream 17289 16716275 ~ 16783557 (-) True AMCG00006734
AMCG00006723 mRNA downstream 739036 16051366 ~ 16061810 (-) True AMCG00006723
AMCG00006722 mRNA downstream 761458 16032419 ~ 16039388 (-) True AMCG00006722
AMCG00006720 mRNA downstream 872705 15899543 ~ 15928141 (-) True AMCG00006720
AMCG00006719 mRNA downstream 903977 15891253 ~ 15896869 (-) True AMCG00006719
AMCG00006736 mRNA upstream 26067 16861107 ~ 16861777 (-) True AMCG00006736
AMCG00006737 mRNA upstream 225323 17060363 ~ 17072397 (-) True AMCG00006737
AMCG00006740 mRNA upstream 309659 17144699 ~ 17271736 (-) True AMCG00006740
AMCG00006741 mRNA upstream 491589 17326629 ~ 17327076 (-) True AMCG00006741
AMCG00006743 mRNA upstream 568586 17403626 ~ 17406828 (-) True AMCG00006743
TU139946 other downstream 1047611 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 2046876 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 2046876 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 2436424 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 3297618 13455432 ~ 13503228 (-) True AMCG00006663
TU140351 other upstream 797851 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 1504230 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 2798197 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 3400816 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 4019017 20854057 ~ 20949836 (-) False AMCG00006813

Expression Profile