RNA id: AMCG00006736


Basic Information

Item Value
RNA id AMCG00006736
length 600
RNA type mRNA
GC content 0.63
exon number 2
gene id AMCG00006736
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 16861107 ~ 16861777 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCACAGCACAGAGTCCCTGTCAGTCAGGCCAGCATCAACTCCTCCGCTGATGACGCGCCACTGCAGAGCCTGGCCGTGACGTCACCCGCTTCTCGCGAGATTATGGAAAGCGAGTTCACACGCCACCCGACGTCCAGCACCCCCTCCCCACGCCCCAGTGCGCTGTGGGATAGTGGCAGTATAAAGTATATCCTCCCTCGGAAAGCGATAAGAAGCCAAGGCAGGAGGGGGATGAAGATGGCGGACGCCAAGCAGAAGCGGAACGAGCAGCTCAAGCGCTGGCTGGGCTCGGAGACCGACCTGGAGCCGCCCgtgctgaagaagaagaagaccaaAGTGAAGTTCGACGATGGCGCCGTCTTCCTGGCCGCCTGCTCCAGCGGCGACAGCGACGAGGTGCTCAAACTGCTGGACCGGGGCGCCGACATCAACTACGCCAATGTGGACGGGCTCACCGCCCTCCATCAGAGGGGACATTTGAGGCCAGCGCCGATCGGATCAAACGAGCCCCAGAGCCGCGGAGTCGCTGTTTACCTTGTTGCGGTGGCGAATGGCAGAGGGCCGGCCGTGGGGCTGCAGCTCGTCGGGCTGGATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140035 lncRNA downstream 964264 15881130 ~ 15896843 (-) False AMCG00006719
TU139944 lncRNA downstream 1118392 15742446 ~ 15742715 (-) True G111765
TU139937 lncRNA downstream 1131574 15728613 ~ 15729533 (-) True G111759
TU139912 lncRNA downstream 1201695 15657998 ~ 15659412 (-) True G111736
TU139903 lncRNA downstream 1302906 15557943 ~ 15558201 (-) True G111730
TU140185 lncRNA upstream 900 16862677 ~ 16862967 (-) True G111940
TU140191 lncRNA upstream 36642 16898419 ~ 16901537 (-) True G111945
TU140192 lncRNA upstream 36642 16898419 ~ 16901537 (-) False G111945
TU140193 lncRNA upstream 36642 16898419 ~ 16899893 (-) False G111945
TU140194 lncRNA upstream 36642 16898419 ~ 16901537 (-) False G111945
AMCG00006735 mRNA downstream 26067 16800846 ~ 16835040 (-) True AMCG00006735
AMCG00006734 mRNA downstream 77550 16716275 ~ 16783557 (-) True AMCG00006734
AMCG00006723 mRNA downstream 799297 16051366 ~ 16061810 (-) True AMCG00006723
AMCG00006722 mRNA downstream 821719 16032419 ~ 16039388 (-) True AMCG00006722
AMCG00006720 mRNA downstream 932966 15899543 ~ 15928141 (-) True AMCG00006720
AMCG00006737 mRNA upstream 198586 17060363 ~ 17072397 (-) True AMCG00006737
AMCG00006740 mRNA upstream 282922 17144699 ~ 17271736 (-) True AMCG00006740
AMCG00006741 mRNA upstream 464852 17326629 ~ 17327076 (-) True AMCG00006741
AMCG00006743 mRNA upstream 541849 17403626 ~ 17406828 (-) True AMCG00006743
AMCG00006746 mRNA upstream 910190 17771967 ~ 17793459 (-) True AMCG00006746
TU139946 other downstream 1107872 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 2107137 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 2107137 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 2496685 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 3357879 13455432 ~ 13503228 (-) True AMCG00006663
TU140351 other upstream 771114 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 1477493 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 2771460 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 3374079 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 3992280 20854057 ~ 20949836 (-) False AMCG00006813

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00055745 True 4846 mRNA 0.48 26 NC_007115.7 21488990 ~ 21584158 (-)
grasscarp (Ctenopharyngodon idella) CI01000019_04262562_04262937.mRNA True 1914 mRNA 0.41 2 CI01000019 4262037 ~ 4264032 (+)