RNA id: AMCG00006737


Basic Information

Item Value
RNA id AMCG00006737
length 1220
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00006737
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 17060363 ~ 17072397 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATGAAACGATAACTGTGAATGGCTGTCCAGAATACCAAGCTCGCGCTACAGCAAAGGCTACAGTGGCCGCTTTTGCAGCCAGTGAAGGCCATTCACACCCACGGGTGGTGGAGTTGCCCAAGACCGAGGAAGGCCTGGGCTTCAATGTGATGGGAGGGAAGGAGCAAAATTCACCAATCTACATCTCACGCATCATCCCAGGGGGAGTGGCCGAGAGGCACGGTGGGCTGAAGCGAGGAGATCAGCTACTGTCTGTCAATGGAGTGAGCGTGGAAGGGGAGCACCATGAGAAGGCGGTGGAGCTGCTGAAGGCGGCCAAGGAGAGCGTGAAGCTGGTGGTGCGCTACACCCCCAAGGTCCTGGAGGAGATGGAGGCGCGCTTCGAGAAGCTGCGGACGGCACGGCGCcgacagcaacagcagctcctactgcagcagcagcagcagcagcaacagcagcagcagcagacacagCAGGCTCAGCAAAACCATATGTCGTAGtttttttcatAAGAAGAAAAACTAGAAGACACTGAACAGACATTTTTGCAAGTTCTTCATCATTTGCAGCAGAACCAGTGAAAGTACCAACAGGAAGATTGTTGTGTATGAGTCTGTTTCACTCACCTACTGTGTAACTATAGTTTTTGagatgtgaaaagaaaaatcaacctAAAATGTATGCATTGGTGCTGTAAAAATTACCcattgaaaatacatacaatatatataacatagACAAAGCAGAATGGCACTGAACATTACCCGTGTCGAGTAACTACTTCTCAATAACACACGGAATCACTAACTTTTTCCACAAAGGATGCTACcttttgtatatgtttgtgtaatttCATAGTTcatgtttctgaaatgtaatgtctgtttttgtcaGGGTTtctatattgtttgttttaagattatttttaaagtgcatttttgATGTAtgtgtcttaaaaaaaatgtgaatggaCCTTTATCTTCAGTGTGTAGCATTTGTCCCTAACTTGGATAAATGCAggctttttttttacctgatgTAGCAAACAAATCTATTATTGACAAAATCAGATTTTCTATCTTAAACTCTAATTTAAATGGCAAAGTTTATTtgatataatgtataattattatattaaaacgtTATTATAACTAgcatatatgtttttctttgttgataCCCTTGGGGATTGTACATGTATGGATGCAAAATGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140191 lncRNA downstream 158826 16898419 ~ 16901537 (-) True G111945
TU140192 lncRNA downstream 158826 16898419 ~ 16901537 (-) False G111945
TU140194 lncRNA downstream 158826 16898419 ~ 16901537 (-) False G111945
TU140193 lncRNA downstream 160470 16898419 ~ 16899893 (-) False G111945
TU140185 lncRNA downstream 197396 16862677 ~ 16862967 (-) True G111940
TU140283 lncRNA upstream 36580 17108977 ~ 17327586 (-) True G112020
TU140287 lncRNA upstream 55920 17128317 ~ 17135516 (-) True G112024
TU140448 lncRNA upstream 1326866 18399263 ~ 18408777 (-) True G112140
TU140510 lncRNA upstream 1622675 18695072 ~ 18744463 (-) True G112195
TU140511 lncRNA upstream 1622675 18695072 ~ 18745217 (-) False G112195
AMCG00006736 mRNA downstream 198586 16861107 ~ 16861777 (-) True AMCG00006736
AMCG00006735 mRNA downstream 225323 16800846 ~ 16835040 (-) True AMCG00006735
AMCG00006734 mRNA downstream 276806 16716275 ~ 16783557 (-) True AMCG00006734
AMCG00006723 mRNA downstream 998553 16051366 ~ 16061810 (-) True AMCG00006723
AMCG00006722 mRNA downstream 1020975 16032419 ~ 16039388 (-) True AMCG00006722
AMCG00006740 mRNA upstream 72302 17144699 ~ 17271736 (-) True AMCG00006740
AMCG00006741 mRNA upstream 254232 17326629 ~ 17327076 (-) True AMCG00006741
AMCG00006743 mRNA upstream 331229 17403626 ~ 17406828 (-) True AMCG00006743
AMCG00006746 mRNA upstream 699570 17771967 ~ 17793459 (-) True AMCG00006746
AMCG00006745 mRNA upstream 872619 17945016 ~ 17954821 (-) True AMCG00006745
TU139946 other downstream 1307128 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 2306393 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 2306393 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 2695941 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 3557135 13455432 ~ 13503228 (-) True AMCG00006663
TU140351 other upstream 560494 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 1266873 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 2560840 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 3163459 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 3781660 20854057 ~ 20949836 (-) False AMCG00006813

Expression Profile