RNA id: AMCG00006741


Basic Information

Item Value
RNA id AMCG00006741
length 258
RNA type mRNA
GC content 0.60
exon number 2
gene id AMCG00006741
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 17326629 ~ 17327076 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGTGTGAAGTCATGCCGACCATCAACGAAGACACCCCCATGAGCCAGCGGGGCTCGCAGAGCAGCGGCTCTGACTCGGACTCGCATTTCGAGCAGCTGATGGTCAACATGCTGGACGAGCGTGACCGGCTGCTGGACACGTTACGTGAGACGCAGGAGAGCCTGGGTCTGGCTCAGCAGCACCTCCAGGACGTGATCTACGATCGCGACTCCCTGCAGAGGCAGCTCAACTCTGCGCTCCCTCAGGTGGGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140287 lncRNA downstream 191113 17128317 ~ 17135516 (-) True G112024
TU140191 lncRNA downstream 425092 16898419 ~ 16901537 (-) True G111945
TU140448 lncRNA upstream 1072187 18399263 ~ 18408777 (-) True G112140
TU140510 lncRNA upstream 1367996 18695072 ~ 18744463 (-) True G112195
TU140511 lncRNA upstream 1367996 18695072 ~ 18745217 (-) False G112195
TU140523 lncRNA upstream 1556552 18883628 ~ 18886046 (-) False G112205
TU140524 lncRNA upstream 1556552 18883628 ~ 18886046 (-) True G112205
AMCG00006740 mRNA downstream 54893 17144699 ~ 17271736 (-) True AMCG00006740
AMCG00006737 mRNA downstream 254232 17060363 ~ 17072397 (-) True AMCG00006737
AMCG00006736 mRNA downstream 464852 16861107 ~ 16861777 (-) True AMCG00006736
AMCG00006735 mRNA downstream 491589 16800846 ~ 16835040 (-) True AMCG00006735
AMCG00006734 mRNA downstream 543072 16716275 ~ 16783557 (-) True AMCG00006734
AMCG00006743 mRNA upstream 76550 17403626 ~ 17406828 (-) True AMCG00006743
AMCG00006746 mRNA upstream 444891 17771967 ~ 17793459 (-) True AMCG00006746
AMCG00006745 mRNA upstream 617940 17945016 ~ 17954821 (-) True AMCG00006745
AMCG00006747 mRNA upstream 660953 17988029 ~ 17991899 (-) True AMCG00006747
AMCG00006757 mRNA upstream 891097 18218173 ~ 18218449 (-) True AMCG00006757
TU139946 other downstream 1573394 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 2572659 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 2572659 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 2962207 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 3823401 13455432 ~ 13503228 (-) True AMCG00006663
TU140351 other upstream 305815 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 1012194 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 2306161 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 2908780 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 3526981 20854057 ~ 20949836 (-) False AMCG00006813

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00055754 True 3713 mRNA 0.55 29 NC_007115.7 21962316 ~ 22207873 (-)