RNA id: AMCG00006742


Basic Information

Item Value
RNA id AMCG00006742
length 1656
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00006742
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 17407029 ~ 17466135 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCTGCTTGCTAGTAGACAGTGCCTCAATAGAAACCGTAAAGACGACATTAGATGCGATTAAAGAATTCCTCACTATCTCGCTTAGGATAGCAAATGCTCACACTGTTGACTTTTACACCGGAGATGTGTGGGCTGCATACATGGCTGTCCCCCCCGAAAACGTGCTGTCGGTGATCGGCTCTAGGCAGGAGAGGGCGCCATTGGACGCGGAAACCCAAGGAAGTATAGTACACAAAATGGCTCCTTATGGTTTCAGCAAGGACACAAAACACTTGGTGGATGTAGCAAGATTTCTTGATGCTGCAAAAGCTCATTCTCTGCCAAACCTTCCCGTGTGCACGCCACTGCGTGGACTGATGCACTCGCTACACGGCGGGACATTCAAGAGCAGAGATGTCATTGAATTTTCAGATGTGACTCTGAGAACCGACGAGTTTATGAATTCAAAGAAATCACACGAAGTGCAGATCATGTCAGAACTGGTTGCAAGTTTAACCAAGCACTGCCGGATCCAGCAGGTCATAGACATTGGATCTGGAAAAGGCTACTTGTGTTCATTCCTGTCCATGCAGTATGGCCTGAAGGTTTATGGGATAGACTCCTCCAGCACCAACACGCACGGGGCCCACGAGAGGAACCGGAAACTGAAGAAGTTTTCAAAAGCCTACCAAAGACACAGCAACGCAAGACATCCAAGACCGATTTCAAAGGGTGAAGAGAAGAAACAGGTGCAGGAAGGGGGTGACAACACCAATAAATCTGTATTGAACAACAAAGACACGGACGGACTGACATCACACTTGGAAAGGGCCACTCTTCAAGGGCCTGCTACCTCACTCAGCCCCCCTGAGGAGACTCTGAAGGCTAAAGCTGAGACAagtacagacacacaattaGATGCAACAGACGTTGAAACTGCCAACCCGTTCCTCTGCGTCCTCTCGGCAGACGCAGTAGAGTTACCTTCTCCACGGACACCTCCCAGCGAGCTGAGcacagaggagaaggagaggcgGAAGAGTGAAAACCTGAGGAAGAAGGCCCAAAGCAGACATGACAGCAGCTTGTACTCGCCTCTGACCTCTTACGTTACAGCCGAAACAGAACTGCGGGAGATCATAGCCGACATGGAGGATTCTGTAATGGTTGGCCTCCACACATGTGGCGATCTTGCGCCTAACACTCTCCGGATGTTTGTGGCCAGACCTGAGCTGAAGGCGGTGTGCAGTGTGGGCTGCTGCTATCACCTCTTATCTGAGGAGTTTGATTGTGCAGGACAAGAATGTCCTGGCGGTGTGTGGGGGTTCCCTATGAGCCAGTTCATGAGACAACAGAGCTGGTACTGTGGCAGGAATGCGAGGATGTCAGCATGTCTTgCACTTGAAAGAGTAACTGTTGGCCAAGGGCTCTCTGAAAGCCTAATTAAGGATTACTATGATACATATAGACCAAGAATGAAAGAGATGGAGGCTTTCAATAAGaaaCAGACACTTTCTATCCTCAGGATACAGGACACTTTCCAGCGCCGCGGCTCCAGCTCCAGCCCCAACCCCAGCTCCAGCCCCAGCCAGCCGGGGAGGCTCTCAGATGCGTCCCGCCGCGCCGTGAGCACACAGCCCCCGTCTCTCTGTCCCGCGTCCGATCCACGCTGA

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140186 lncRNA upstream 543674 16863156 ~ 16863355 (+) True G111941
TU140140 lncRNA upstream 596559 16800845 ~ 16810470 (+) True G111909
TU140142 lncRNA upstream 602447 16779402 ~ 16804582 (+) False G111909
TU140129 lncRNA upstream 684981 16714818 ~ 16722048 (+) True G111898
TU139968 lncRNA upstream 1537228 15849921 ~ 15869801 (+) True G111788
TU140403 lncRNA downstream 748658 18214793 ~ 18215048 (+) True G112106
TU140493 lncRNA downstream 1227743 18693878 ~ 18694311 (+) True G112181
TU140495 lncRNA downstream 1229024 18695159 ~ 18745217 (+) True G112182
TU140496 lncRNA downstream 1229024 18695159 ~ 18744463 (+) False G112182
TU140528 lncRNA downstream 1434804 18900939 ~ 18903543 (+) True G112207
AMCG00006738 mRNA upstream 263589 17137157 ~ 17143440 (+) True AMCG00006738
AMCG00006739 mRNA upstream 286304 17101722 ~ 17120725 (+) True AMCG00006739
AMCG00006733 mRNA upstream 369894 17026322 ~ 17037135 (+) True AMCG00006733
AMCG00006732 mRNA upstream 384319 16954888 ~ 17022710 (+) True AMCG00006732
AMCG00006731 mRNA upstream 459569 16940262 ~ 16947460 (+) True AMCG00006731
AMCG00006744 mRNA downstream 71542 17537677 ~ 17564638 (+) True AMCG00006744
AMCG00006749 mRNA downstream 351680 17817815 ~ 17855390 (+) True AMCG00006749
AMCG00006748 mRNA downstream 393997 17860132 ~ 17864658 (+) True AMCG00006748
AMCG00006751 mRNA downstream 472767 17938902 ~ 17942224 (+) True AMCG00006751
AMCG00006750 mRNA downstream 497266 17963401 ~ 17964771 (+) True AMCG00006750
TU139270 other upstream 4363581 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 7839678 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 8682963 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 9230243 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 9751835 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 3471362 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 3582201 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 3676730 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 6565978 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 6838644 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile