RNA id: AMCG00006743


Basic Information

Item Value
RNA id AMCG00006743
length 2276
RNA type mRNA
GC content 0.36
exon number 4
gene id AMCG00006743
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 17403626 ~ 17406828 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTGCGGTTGTTCGGGTTGAACAGTAATGTCTGAATGTTTTCTAGTGACGTACTTTATGTGCGACTGTAAGCGTCAGCGGTGGGGGAAGAAACGTGTATGGTGCAGTAAgaagtgaaatgtgaaaatggccCAAGTGAGTAAAGAGTCgaggaagaaaataaacctaAATGTGCAGAGAACACACAAAAAGCATGTATCGGGCTTTgcgaaaaataaaagaaaatgggtTGCAGACGAATCGAAAGTATTTGCTGGGAGTATACAAGAAGGACAAGGTTTCGCCTTTAAAAGGAAGCAGAAAGTCCAATATGAGTACAAGAAACTGCTGCGCAAGGAAAAGAGATCAAAGCCGCAGCGGCAAGTGCAGTTCACACAAAACTACCCGGATCACCTGAAGCACCTGTATCTGGCTGAAGAGGAGCTGCTGAAGAAGGAAGAGCAGAAGAGCAATTTGagaagacacagagagagacccgTTTTGCCGGAGGAGACGGTTTCTACAGACTGCACAACCACAGATGCTTCCCCTTCAACAAGTCCACCTATTACTCATGACACAGGCTCTTCTAGCACACCTCCTGCTGCGGCCTCGTCTCCTGCCCCAGGTCCTGCTGCAGAGCCACACAGTGATCtgaaaccaaagaaaaatataaagaagaCTTCCTATCAAAAGACAAGAGATGAGTATGAAAGGATACAGGCTAAACGTGCTAAAAAAAGAGAGGAAgcggagaaaaataaaaaacaaagagaagaagCTCTCAGACAATacaagcaaaagaaaatgcagaattaTCAGATATTGAGCAAAAAGACTAAAAGGGGTCAGCCCAACCTGAATTTACAGATGGAATACCTTCTTCAGAAAATTCAGGATAAAACCACAGGAAACAAGTAATCTGGGATGAAATGTGGGCTAACAAATTGTAACTTCCACCATATTGGTGCTGTGCATTTGTGAACATCTGAATTACCCTGGAGATATAATGGAATCATTTTTTACAAGgactttattatattaaaatacctAATTTCTTAAAACGTATTAAATGTAGGTTcatctttctttgttttgacatttataATACCTACATATTTTACTGTCTTCCACATTcaatgacagtttttttttttatataatttcatatttcttttaTTGGAAAGGTTCAGTAATATCACACATTTTTGATAAAGAACTCAATGTTGGGGCCATTTCAAAGTTTAATTCAAAGTAGTTAGacaatgtattcatattatgaATTTATcaattccatatatatataatcacctATGTAAAATATGGCCCTGCAGTTGCATGACTTTTCTTCCACATGCAATTTTACTGATCTCCTACAGGTGTCCCTGCAGCCACTCTGGTTAAATTatctttacaataattaaatattgctgTGTTACAAGTTTAGGGTTcgtgttattaaaatattgaaggCAGAGGAAAAACTCAAATTGTGGAGTTAGCAAAATTACACCCCAAAAactgaaatctttgcaaattttgtaatgtgtaaatcATGATTAAATGTGacctgtaaatataaataatcaaatatagaTCTTTAAAAGAGAACAGGGCATTTATTAGTGTGGATTCCATGACCGCAGAGAAAAAATGTCCTTCTGTGTGTAAACCACCGTGACATTCCCGCATAACAGGATGGGAATACATGACTGATTTGCATATGAACTCCCTCCTTTACATTTAAGTTGCATGACATCAGGTTAATGGCAGTTTTTTTCTGAGTAAAATAAACTTTGGTAAATTCCTTTGGTACATTTGTCGCAAGCTAAATGTCTTGAGTATGATAAGAACATAGACCTACATGTAAACTTAACCAATAAACAAATGATTTGCTCCACTGTAACCATTTCAGATTACATAAAATCTGCCACAATCCAAAACAAAGAATAACCACAAGCTAGAATAACTATTATAAAAAGGTTTCTAATTTATGAACCCTATGAAGCTTGATGACAAATGGATTGATTGCattatgttgtttatttcaaattgcatttttttttaaatcaagactaatctaaataaacataaataatcatCTTGATCTCCAGAAGGCTGAAAAACAAACCCGACAGCACACTGAAGAATGGAGAATATGATCTCTGCATGGGAAgaatttgcaaatatttaacttttgtgCTTAAACCAATTTCCCgtgaagaggaaaataaaatccttaaATTGTGCATTAGGTAAGTTTCCAATTATCAATAAAACATTGGTTTAAAAGCAGC

Function

GO:

id name namespace
GO:0051301 cell division biological_process
GO:0009987 cellular process biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0000152 nuclear ubiquitin ligase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0016592 mediator complex cellular_component
GO:0005680 anaphase-promoting complex cellular_component
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140283 lncRNA downstream 76040 17108977 ~ 17327586 (-) True G112020
TU140287 lncRNA downstream 268110 17128317 ~ 17135516 (-) True G112024
TU140191 lncRNA downstream 502089 16898419 ~ 16901537 (-) True G111945
TU140448 lncRNA upstream 992435 18399263 ~ 18408777 (-) True G112140
TU140510 lncRNA upstream 1288244 18695072 ~ 18744463 (-) True G112195
TU140511 lncRNA upstream 1288244 18695072 ~ 18745217 (-) False G112195
TU140523 lncRNA upstream 1476800 18883628 ~ 18886046 (-) False G112205
TU140524 lncRNA upstream 1476800 18883628 ~ 18886046 (-) True G112205
AMCG00006741 mRNA downstream 76550 17326629 ~ 17327076 (-) True AMCG00006741
AMCG00006740 mRNA downstream 131890 17144699 ~ 17271736 (-) True AMCG00006740
AMCG00006737 mRNA downstream 331229 17060363 ~ 17072397 (-) True AMCG00006737
AMCG00006736 mRNA downstream 541849 16861107 ~ 16861777 (-) True AMCG00006736
AMCG00006735 mRNA downstream 568586 16800846 ~ 16835040 (-) True AMCG00006735
AMCG00006746 mRNA upstream 365139 17771967 ~ 17793459 (-) True AMCG00006746
AMCG00006745 mRNA upstream 538188 17945016 ~ 17954821 (-) True AMCG00006745
AMCG00006747 mRNA upstream 581201 17988029 ~ 17991899 (-) True AMCG00006747
AMCG00006757 mRNA upstream 811345 18218173 ~ 18218449 (-) True AMCG00006757
AMCG00006756 mRNA upstream 812088 18218916 ~ 18337052 (-) True AMCG00006756
TU139946 other downstream 1650391 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 2649656 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 2649656 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 3039204 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 3900398 13455432 ~ 13503228 (-) True AMCG00006663
TU140351 other upstream 226063 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 932442 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 2226409 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 2829028 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 3447229 20854057 ~ 20949836 (-) False AMCG00006813

Expression Profile