RNA id: AMCG00006747


Basic Information

Item Value
RNA id AMCG00006747
length 1400
RNA type mRNA
GC content 0.42
exon number 3
gene id AMCG00006747
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 17988029 ~ 17991899 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaGGTTTCAGCAGCTACTTTAACATCATGAGGCTGATTTGGAAGTATCTGGACAAAATGAGGTGCTTCCGAAAGCGCTCAACTATTCCTCTCTTGGGTGAAGAGGACAAGAGGCAACTACGAGACACATCAATACATCAACTTAATTCAGAACGTTACGTCCATACTTTCAAAGATTTATCAAATTTTTctggaaatataaatgttacatatcGCTACCTTGCAGGATCACCCCTACCCAGAAAAAAATACCTAACCATTGGATTATCATCTGTGAAAAGGAAAAGAGGAAATTATTTACTGGAAACAATAAAGTCTATTTTTGACCAGTCCAGCTATGAAGAATTAAAGGAGATAGTGGTCGTGGTTCATTTGGCAGACTTTGACTTGGCATGGTGTGAAAGCTTAGTGCAGGATATCTCCAGGAAGTTTGCCCACCATATTATAGCTGGAAGACTTCTGGTCATACACGCTCCTGAGGAGTATTACCCATCACTGGATGGATTAAAGAGAAACTATAATGACCCAGAGGACAGGGTCCGGTTCAGATCCAAGCAAAATGTCGACTATGCTTTCCTTTTAAATTTCTGCACCAATCTCTCAGATTATTACATGATGCTCGAGGATGACGTCAGGTGCTCCAAGAACTTCTTAACTGCCATGAAAAAAGTTGTTACCTCAAGGGAGGGCTCCTACTGGGTTACTCTGGAGTTCTCCAAGTTGGGTTACATCGGGAAACTCTACCATGCCAACGATCTCCCTCGCCTGGCCCACTTCCTGTTGATGTTCTACCAGGAGATGCCGTGTGATTGGCTGCTAATTCATTTCCGGGGGCTTCTTGCACAAAAGGATGTCATACGGTTCAAGCCATCTTTGTTTCAACACATGGGATATTATTCTTCTTACAAGGGagctgaaaacaaactgaaggatGATGACTTTGAAGAAGACTCCTTTGATATTCCAGATAACCCACCAGCCAGTCTCTACACAAATATCAATGTCTTTGAAAACTATGATGCCAGCAAGGCGTATAGTAGTGGGGATGAGTACTTCTGGGGCAAATCCCCTTCGACTGGAGACTTCTACGTCATTGTTTTCGAAAAATTGACCAAgatcaataaaattaaaattgtcacAGGAACGGACGACCGTCAAAATGATATTTTGCATCACGGCGCCTTAGAAGTTGGAGAGAAATTAGTTGGGACCAAAAAGGGAAAGCAGTGTTCAGCTTACATTACCTTAGGGGAATTTAAAAACGGGAACATTGAAGTCCTGGATGTGGAACATAAAATCTCATTTGATATTGAATGTGTAAGAATTGTTGTGACAGCTAATCAAAAGGAGTGGTTGATTATAAGGAGTATAAGCCTTTGGACTACACAGCCCCCAAGTCAA

Function

GO: NA

KEGG:

id description
K13748 MGAT4C; alpha-1,3-mannosylglycoprotein beta-1,4-N-acetylglucosaminyltransferase C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140283 lncRNA downstream 660443 17108977 ~ 17327586 (-) True G112020
TU140287 lncRNA downstream 852513 17128317 ~ 17135516 (-) True G112024
TU140191 lncRNA downstream 1086492 16898419 ~ 16901537 (-) True G111945
TU140448 lncRNA upstream 407364 18399263 ~ 18408777 (-) True G112140
TU140510 lncRNA upstream 703173 18695072 ~ 18744463 (-) True G112195
TU140511 lncRNA upstream 703173 18695072 ~ 18745217 (-) False G112195
TU140523 lncRNA upstream 891729 18883628 ~ 18886046 (-) False G112205
TU140524 lncRNA upstream 891729 18883628 ~ 18886046 (-) True G112205
AMCG00006745 mRNA downstream 33208 17945016 ~ 17954821 (-) True AMCG00006745
AMCG00006746 mRNA downstream 194570 17771967 ~ 17793459 (-) True AMCG00006746
AMCG00006743 mRNA downstream 581201 17403626 ~ 17406828 (-) True AMCG00006743
AMCG00006741 mRNA downstream 660953 17326629 ~ 17327076 (-) True AMCG00006741
AMCG00006740 mRNA downstream 716293 17144699 ~ 17271736 (-) True AMCG00006740
AMCG00006757 mRNA upstream 226274 18218173 ~ 18218449 (-) True AMCG00006757
AMCG00006756 mRNA upstream 227017 18218916 ~ 18337052 (-) True AMCG00006756
AMCG00006754 mRNA upstream 347637 18339536 ~ 18366562 (-) True AMCG00006754
AMCG00006755 mRNA upstream 424017 18415916 ~ 18486164 (-) True AMCG00006755
AMCG00006759 mRNA upstream 544150 18536049 ~ 18603662 (-) True AMCG00006759
TU140351 other downstream 354584 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 2234794 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 3234059 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 3234059 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 3623607 14360228 ~ 14364422 (-) True G111489
TU140430 other upstream 347371 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 1641338 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 2243957 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 2862158 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 5412276 23404175 ~ 23407207 (-) True G113050

Expression Profile