RNA id: AMCG00006749


Basic Information

Item Value
RNA id AMCG00006749
length 5055
RNA type mRNA
GC content 0.42
exon number 18
gene id AMCG00006749
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 17817815 ~ 17855390 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACAACGCATGTTTTGAAGAAACCATGAAACAAGAGCTGGGCCAGATCTGCCTTCACAGCTCAGACACTGAAGACTTAGACTCGTCCTCCGAAGATGAGTGCATTTCTGATGAAGATCCAATCCCTGACGAGATTCCCGAGTCAGTGCTCTCATGTCTGAAATCGTCTACAAACAGGATACACCATGCTGAACAACTTATTCTTCAGGATCTAGAGGAAACATACTGTGATGATTTCAATCAAGACAGTTATGGAGTTATTTCAGATTACAGCAACGATCTTTTGAAGGAGTTGGCCTCTGATTACCATGAGGACCCTATCAGATTAAAAGAGCGAATATTATGTGAAATTGAGGAAGAGGAAGCCCTGAATACATTGAGTAGAGCTGATCTTCAACAGGCATCACAGGATGAAGTAAAGGAGAACATCCCTGGTAAGGAGAAAGaGAACTTGGAGGACGCTCTGGCTACTGAATATGTAGAAACCGAGACACGATGTCACCGGGAACTGGAGCTTTTGGAGaagaaattgaaagaaatagAAGAGAACAGGACTGTGAAGCTcatggaaaagaaaatccaaCAGCAGAAAgagcaaagggaggaggaagagagaaagaagcaGAGAAAGTTTGAAGAGGATTTGGAAAAATTAGAAGATAAAAATATGGAACTGATCGAACACTTGCAAAAACACATGGACGAGCAGAAAAGAGCTTTTGAAAGACAACAAGCCATGGAAAGAAAGAGAACAGAAGATATTCAGTGCAGAGCGGCAATAAGAATCCAGGCTACAGTCCGACGATTCCTGGTCCTGAAAAAGACCGCGTTCGTCCTGAGccagaagagagaggagaggaagaggaagagagaactacagctgcagctgcagaagGAGCAGAGGGAACGAGAGGAGAGGCTCAGGAAAAAGATAGAGGAACAAAAACTtagagaagaggaagaaaagaagCAGAAAGATGTCGCGGAGCGGCTGGCGagggaggagcaggagaggagaCAAGCTGCTTACAGAAAGGCCAAGGAAGAGGACCGCCTGCGCTTGGAAAGGGAGCGGAAACTGAAGTTGGAAGAAGCGAGAAAAAGGAAGGAGGAAGAAATGAAGCAAAGGGAAGAATGTGAGAGAAGACTGAGGATGGAGGAGGAAGAAAGACAGGCAAGGgaggcagaaaaaaagaaaagggaggaACAGAGAAGGGCAGAAGAGATGGAGAGGAAGAGATTGGACGAGCTCAGgaagaaaagtgaaaatgaggagatgcaaaagcaaaaggagGATCTActcaaagagaaacaaatgaaatgtgaaCATTCAAGTGCTGCTATACGCCTTGATGAAATTAGTACAATATCTCGACAAAAGTGCACACACTCTACAACGCTGGTGCAAGTCTCAAGTTGTTTAGGTAGTGACACCAGAGTTGTtgagcaaacaaataaagagcAGTCTGATTTACATGTGGAAACATCTCTTAAAATCACAAATGCTTTAGTAAGTTGTAACACTGAGAGCAGTCCACCTTTTACAGACAAAACAGAGATGGACAGTGTCACCAGCATTAAAGGCCAGTCTTTGCAGGAGAATGGGAGTTTCTGTTGCACAGATGAAGCTGTACTTGGGTCACCTTGTCAACCAGGACCGTACGGGAAAAGTGAAGTTAATTACGAAAGTGTTACGGTCTCGGACACAACTTCTCCATCACACCAGATGTGTTTGCCTGACGGTACTGAGCAGAAGAGGCTGGCGTGGATGAAAGCCTGCACTCCCTGGTCTCAGATATCCATGCAGCATAAGAGGATGCAGGTGGTGAAACGGAAAGTGATCAGAAAAAGTTCAGCGGTGCAGCTGCCTGCCTTGAGTACAAAGACTATCCTTCAATCTGGTGACTGGATTTCTTTGAAGCAGgtCACAAGAGTAACACTTCAAGACTTGCCTGGCTGCAGCCTGTCTACACTGTCAGAGTGTACGAAACTGCAAATGCTGAGTCTCAGAAGGTGTGGCTTGACAGCTTTAGATGGTCTCAGTGGCTGCAAAGATCTAAAATATATTGATGTACAGgaaaatacAATCCAGTTCCTTAACTGTCAGGATCTGGATAACATTGAAATCCTTCTCCTGAATCAGAATCAGCTGACATCTGTTCATGGTTTGGAAGCAGCCAGTAATGTGCAGGTGCTGGAACTGTCACACAACCACATCACACGCATCAGTGGTTTGGAATCTTTAAAGAAGCTCCAAACACTAATAATCGACCATAATCAGTTAATCAGCACTAAAGGCTTAAAGGAAACATCTACTCTCTTGTACCTTGATTGTGCTTACAACCATCTCAACAATATCGACGGCTTAGACAACTGTGCGCTGCTCACTACATTGAAGCTCCAGGGAAATAATCTCACAGAGCCACCCAGTTTGGTAAACCATGTGCTGATGAAGGAGTTGTATATGGATGACAATAATATTGTTTCACTGGAGAGCTTATCAGCTTGCTGGCTTCCACTTCTCAGGATGCTTTCAGTATCAAGAAACAGGTCTTCTGTACGAGGGATTTTGCCGGGCTTAAAGAAGATTAATGAAGAGTTTATAAACTCGACACAAGTATCTCCCTCAGACAGAAGCACCAGACCACCACCAGGGAGTTTCTTGGCACTCTGTCAAGACCAGCTTAAGCAGCTAGAGCGCTTGCTTAAAAGACATGATAGTGAACGTCGTGTTCTTTGTCCTCTGGATGTCCCAGTGACTATAAGTCGGCAAAGTGATGAATTGAAAGCGCTGGCTGATGAACACAGATATGCTCATGAATATGGGGACATGAGCATCAGTGATGGAGATGAACCAGGAGCTCAAGACAACCTTTTGATGCAAGGAGCCAGTGACAGGCATCAGCACAATATCCCTTTTATCAGTCAAGCCAAGGAAAATAACCAGGACCCCGAAGAGTTTTCTAAACGATGGATCATTCCAAGCCAAGTTCAGCTTGCAGTCAACTGGTACACTGCCGTCCAGGATCAGGGGAACCAGGAAGCCGAGATATTAGGAGTAAATGCAGGAAGTTCTGCCTTTACCAGTGAGGAAATGGTGCGTATCCAGAGTTACTGGAGAGGATACCTGTGCCGCAGAAATCAGTGGCGCTCAGCCCAACACATTGCAGCGATGGTGATACAGTCAGCTTGGAGAAAATACTGTATTTGCAAGAACAACCGGTTGAACCAATGCTCTTTACAAAATTCAAAAAAGACATGCATGGATACGGAAAAGGCAGCAACTGTCATTCAGGCCACTTGGAAGGGTTATGTTTTACGGAAGAAGCTGCATTCTGCACTTGCCGCTGTTAAAGTCAATGAGATGGATGATGATTTTGAAGAAATGAATATGGATGAAGTTGCATTTGATGAGGCTGCTATGGAGAAGTACTGGCGAACCCTGGattcaaatagtttttcttcCAAAACCCTGCCAGTGTCAGAGCAGCTGCACTGGCCAAAGAGCGCAATCAGCAGCTTCAAGAGCCAAACCGATTCCTCCATCAAGGAAGAAAGAGCAAATATTAGAAGAATGGCAAGTCCTGTAAGCAGAGAACGGCTGGATCAAGAGGCTGGGTCCGTGACCAGTGGCAGTGCTTTGACTGAGGGTCGCAAAGAATATAATCAACCACGTAGGATCTCAACAGGACATGCGAAGAGAGAAGTACCTGTTCCTGTAAAAGCAAAATCTGCTCCATCAACAAAAGAGCGCATTTCATATCGAGACAACCCAGCCCAGCTCAGTACTGGATGGGGGGGCGGGAAGAAGAGATCCTGCAAGTGATGTCGGCAGCTTATGTTCAAGTAAATAAATCAGCCGATATTGTGTTGATATTTGTAGTTCTGTGTCATGAGCAGACCTTTATTCATCAAGAAATTAAAGGATATAATCTGACAAATAGACATATTGCCTTACTGAAATGTACAGTGTTTGTTCTTTGTCGTGCCTGATGTTGTAGGATATGTTGTGAAGCACTGGTATTTCAGCATTCACAGAAAATGATTGTCTAATTTTTCACGTCTTCATGTGTACCTTAACACTTTAATGTAACACAGCTGGAGGCAAAGCTTTGAAATGTACGAATtgtaatattcaaaataattaccaTTGATTAAATTACtgtggagaaaaacaataaatctgGACAAAGACCATCTTAAactactaccactaataataataatattgtttttcttcattcttttattttaatcagtccATTAACATCTGCAATATTATGCAAACAAATCATTAGTCAGTAATGTTATTGGTTTCCTACACGaaaaggaataataaataatattaaagcaattttttagaccttttctgtaaaatacaggaTTTTTAGCAGCCAACTACAACTGTACTAATTATGTTTAAATCAAAAATCGTGCATGGAAAAAGATTGCATGCCGATAAAAGTATCATGCATGTTGAGATGGAAGTGTCCTCAGGCTAGTCTCgtgtagtatttaaaaattaaaaaaatagaaggaGAGGAGGAATAAGGAATGAATTTACATCCATGGTTGTGTAGAGCTTTGTAAACAGCAGCCAACCAGGGCAATAGAATTAATGTGTTCTTCACATGCATTACATAAATATGGAAGGAATAGTGGGCATGTCCAGTCTGAAAACCTAACGACACAAGTCCAGGATACAGAAGTAAATTACATCTTTGGAATAAACAACCTATTTTATTAGAATACTGCCCTGTTGTTGTCCTTACCTCAGAATGAATGTACAATAAAGGATTTTGCGATGAGAGCGTGCTTCATTTTAAGCTTCACAATCCCTTACACCAAACCATCGTATGAAAAGCTGGAAAAAATCCCTATTCATGTTCCCTCTTCAATTATTCCTATTCCTGCTCTACAAATTGCATTGCCCcccatatttttaaatatctgtatctgtcactcattgattaaatgtttcataatgtacaaataatcataaatacataGTTTCACATTTAAGTTTAAAGCATCCGTTGTAGTTAAATTgcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140186 lncRNA upstream 954460 16863156 ~ 16863355 (+) True G111941
TU140140 lncRNA upstream 1007345 16800845 ~ 16810470 (+) True G111909
TU140142 lncRNA upstream 1013233 16779402 ~ 16804582 (+) False G111909
TU140129 lncRNA upstream 1095767 16714818 ~ 16722048 (+) True G111898
TU139968 lncRNA upstream 1948014 15849921 ~ 15869801 (+) True G111788
TU140403 lncRNA downstream 359403 18214793 ~ 18215048 (+) True G112106
TU140493 lncRNA downstream 838488 18693878 ~ 18694311 (+) True G112181
TU140495 lncRNA downstream 839769 18695159 ~ 18745217 (+) True G112182
TU140496 lncRNA downstream 839769 18695159 ~ 18744463 (+) False G112182
TU140528 lncRNA downstream 1045549 18900939 ~ 18903543 (+) True G112207
AMCG00006744 mRNA upstream 253177 17537677 ~ 17564638 (+) True AMCG00006744
AMCG00006742 mRNA upstream 351680 17407029 ~ 17466135 (+) True AMCG00006742
AMCG00006738 mRNA upstream 674375 17137157 ~ 17143440 (+) True AMCG00006738
AMCG00006739 mRNA upstream 697090 17101722 ~ 17120725 (+) True AMCG00006739
AMCG00006733 mRNA upstream 780680 17026322 ~ 17037135 (+) True AMCG00006733
AMCG00006748 mRNA downstream 4742 17860132 ~ 17864658 (+) True AMCG00006748
AMCG00006751 mRNA downstream 83512 17938902 ~ 17942224 (+) True AMCG00006751
AMCG00006750 mRNA downstream 108011 17963401 ~ 17964771 (+) True AMCG00006750
AMCG00006753 mRNA downstream 462303 18317693 ~ 18339457 (+) True AMCG00006753
AMCG00006752 mRNA downstream 513274 18368664 ~ 18400191 (+) True AMCG00006752
TU139270 other upstream 4774367 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 8250464 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 9093749 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 9641029 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 10162621 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 3082107 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 3192946 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 3287475 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 6176723 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 6449389 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile