RNA id: AMCG00006752


Basic Information

Item Value
RNA id AMCG00006752
length 2535
RNA type mRNA
GC content 0.45
exon number 12
gene id AMCG00006752
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 18368664 ~ 18400191 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGAAGTAAACTGGAAGGAGATTGCCCTGTTGATGGGGGTGGTTGTGGCCTGTTACTGGAACAGCCTGTACTGTGGTTTTGTCTTTGATGATGTCTCTGCCATTCTGGATAACAAGGACCTGCGCCCATCAACGCCACTGAAAAATCTCTTTCAAAATGACTTCTGGGGAACACCAATGGCAGAGGTAGCATATGAAAGGAGCCACAAATCGTATCGGCCACTGACAGTCCTTACCTTCCGATTGAACTATGTATTTAGTGAGCTTACCGCAATGTCCTATCACCTCCTGAATCTCCTGCTTCACGGTGTCGTCTGTGTAATCTTTCTGCGGGTTTGCCGGCTCTTCTTGGACAAGAACTCAAGTCTGGTAGCTGCCTTGCTTTTTGCTGTCCATCCAGTCCACACAGAAGCAGTAACTGGGGTTGTTGGAAGAGCTGAACTTTTGTCGTCTATATTCTTATTGGCAGCATTCTTGTCCTATACGAAATCCAAAGGCTCAGACAATTCAATTGTTTGGACTCCCATTGCTCTGACTGTGGTTTTGGTTGCAGTTGCAACATTATGCAAGGAACAAGGGATAACAGTGATTGGAATATGCTGTGTCTATGAAGTATTTGTCGCTCAAGGGTTTACTTTACCTATGTTGGTCGACACATTGCTTCAGGTTCTGCGTGGAAAAGATGGTCTTCCATATTCGGTTCTGCAGACAGTGTTAAAACTTATTGTTCTAATTATAAGCACTTTATTATTGGTAATTGTGAGGGTCCAGGTTATCCAGTCTCAGCTGCCTGTCTTTACAAGATTTGATAACCCTGCAGCCGTTAGCCAGACTCCAGTGAGGCAACTCACGTTCAACTACCTCTTGCCTGTGAATGCTTGGCTACTCCTGAACCCATCAGAACTGTGCTGTGATTGGACAATGGGTACCATTCCACTGGTTGAATCCATACTGGATATCAGGAATCTTGCCACTGTATCTTTCTACTGTCTGCTTGGGTTGATGGTTTATCAAAGCCTCCGGTACTCTGAAAACTCATCCAAAACTGTAATCATGGTGAGtAATCTGAAAAAACTTTCATGGCTTGGCATGGCTATCCTGCTTGGAACTCATGCAGTGAAGACTGTTTATAGAAATTGGGACTGGGAGTCAGAGTACACACTGTTCACCTCTGCTTTAAAggtcaataaaaacaatgccaaGCTTTGGAATAATGTTGGCCATGCGTTGGAGAaccaaaataattatgaaagggctttgaaatattttcttcaagCTACCAGAGTTCAGCCAGATGATATTGGTGCCCACATGAATGTAGGAAGGACATACAAAAATctgaacaaaaccaaagaaGCTGAAGATGCCTACCTGATTGCAAAATCCCTCATGCCACAGATCATTCCAGGAAAAAAGTATGCAACCCGTGTTGCACCCAATCACCTTAATGTTTACATAAACCTTGCAAACTTAATACGGAATAATGAATCTCGCTTAGAAGAGGCGGACCAGCTGTACCGACAGGCGATCAGCATGAGACCCGACTTCAAACAGGCCTACATTAGCAGAGGAGAGCTTctgctgaaaatgaataaaccaGTAGAGGCACGGGAAGCTTATCTCAGAGCCTTGGAACTGGACAGGACCAATGCGGACCTGTGGTATAACCTTGCCATTGTTAACATTGAAATGAAGGAGCCCTCTGAGGCTCTCAAAAACTTCAACCAGGCTTTAGAGCTCAGACCAGAAGCTAACCGGAGGTTTCTCATTTATATCGAGGAGGACCCAGGTGATGCAAATGGGTACTTCAACCTTGGGATGCTTGCTATGGACGACAATAAGAACAAAGAGGCAGAGAAATGGATGAAAAAGGCCATCAGACTGCAGCCAGGTTTTCGGAGTGCACTTTTTAATTTAGCTCTTTTGTATTCCCAGACGGGGAGAGAACTGGATGCTTTACCTGTCCTCAGTGAGTTATTAAGATATTATCCACAACATACGAAAGCCCTGATCCTTAAAGGAGACATTCTGATGAACCAGAAAAAAGACACTAAAGGGGCCAAGGAATGCTTTGAAAAGATTCTTGAAATGGACCCTACCAACGTGCAGGGGAAGCACAACCTCTGTGTGGTTTACTTTGAGGAGCGTGACCTTGTGAAAGCCGAGAAGTGCCTGGTCGAGACCTTGGCCCTTGCTCCGCATGAGGAGTACATTCAACGCCATTTGAGCATAGTTAGGGGCAAGATTGCTGCTTTGAATGCTGCAGGACAAGAGGGATCTCCAGTAGATGGCAACCAAAGCCCAGTtgtggaggagaaaaaaacagagTCAGAGAAGGCCAAGAATGACAAGAATGCACGGAAATCCTCCCCTGCGAAAAACACCAGCCAGAGCAAAGAGCAGCCGAGAAAGCAGGAGAACGCACAGGCTGACAAGCGGACTAAGACCAAATCTACAAAAGAGATTAAGgagattgaaaagaaaagggaagCGGCCTTAAAGAGACTGGAAGAGATTGAACGTATTTTAAGT

Function

GO: NA

KEGG:

id description
K23424 TMTC; protein O-mannosyl-transferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140403 lncRNA upstream 153616 18214793 ~ 18215048 (+) True G112106
TU140186 lncRNA upstream 1505309 16863156 ~ 16863355 (+) True G111941
TU140140 lncRNA upstream 1558194 16800845 ~ 16810470 (+) True G111909
TU140142 lncRNA upstream 1564082 16779402 ~ 16804582 (+) False G111909
TU140129 lncRNA upstream 1646616 16714818 ~ 16722048 (+) True G111898
TU140493 lncRNA downstream 293687 18693878 ~ 18694311 (+) True G112181
TU140495 lncRNA downstream 294968 18695159 ~ 18745217 (+) True G112182
TU140496 lncRNA downstream 294968 18695159 ~ 18744463 (+) False G112182
TU140528 lncRNA downstream 500748 18900939 ~ 18903543 (+) True G112207
TU140557 lncRNA downstream 695437 19095628 ~ 19100398 (+) True G112233
AMCG00006753 mRNA upstream 29207 18317693 ~ 18339457 (+) True AMCG00006753
AMCG00006750 mRNA upstream 403893 17963401 ~ 17964771 (+) True AMCG00006750
AMCG00006751 mRNA upstream 426440 17938902 ~ 17942224 (+) True AMCG00006751
AMCG00006748 mRNA upstream 504006 17860132 ~ 17864658 (+) True AMCG00006748
AMCG00006749 mRNA upstream 513274 17817815 ~ 17855390 (+) True AMCG00006749
AMCG00006769 mRNA downstream 1137142 19537333 ~ 19541966 (+) True AMCG00006769
AMCG00006772 mRNA downstream 1155212 19555403 ~ 19568758 (+) True AMCG00006772
AMCG00006770 mRNA downstream 1211128 19611319 ~ 19621286 (+) True AMCG00006770
AMCG00006771 mRNA downstream 1235926 19636117 ~ 19642171 (+) True AMCG00006771
AMCG00006779 mRNA downstream 1246939 19647130 ~ 19650694 (+) True AMCG00006779
TU139270 other upstream 5325216 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 8801313 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 9644598 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 10191878 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 10713470 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 2537306 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 2648145 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 2742674 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 5631922 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 5904588 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile