RNA id: AMCG00006754


Basic Information

Item Value
RNA id AMCG00006754
length 7104
RNA type mRNA
GC content 0.44
exon number 49
gene id AMCG00006754
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 18339270 ~ 18366562 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgcctGGGATTATTGACTGGAGTGAGCTGATGAAAGTTGATCCAGATGCCTTAACAGAACAAGAGAGGCTGGCTAATAAACTTTTGGATGTAATTTCAAAGGTGGAAAGGAGGCACCTGAAAGATGATAGTCCAGAAAGTATCATCCAGCTTTTCAGAATCACTCAGTCCTTAATGAAGATGAAAGCACAGGAAGCAGATCTAGCTGTAGAAGAAGTAGAGAAAGCTGGTGAAGAGCAAGCAAAAATAGAAAACCAATTACGAAGTAAAATCTACAAGTTGGAGAATGAGCTGGAGATGGCTCAGCGTTCTATGGGGGGACGCGATACCCGGTTTCTTCGCGATGAAATCCATCAGCTGGAGAATCAGTTGGAGCgcagggagaaggagatggcTGAGATGGAGAAAGAAATCAACAAGGAGAAAAAAGCTAATGAAGAAAATGAGCAATTCCGGCAAGATGTTATTTACTATCGGAGGGAGCTGGACCAGAGAGAGCCGCCTCAATCcacagagaaggaaagagaagcGCAAGCAAAACTGACTGGGTTAAACCGAGAGCTTCACCAGTGTCTCGATGAGTTGCAGATGATAACGGACGAGAGGGATGCCTTGAAGGCCGAGAACGAGAAGCTGGAGAAGTACATGGCGGAGTCCTCGAATGAAATGATCTCCATGTCAGAGGAGTATGTCAAGATGAAAACCATAGTCCAGCAGACCGACAGCCTCATGGACCAGCTGAGGAAAGAGCGAGAGCAGCTGAGGTTACAGGTGCAAGAGCTGACAGAGCAGATCCAGGCCAGGTCAGACGAGGATGACCCGGTCATGGCAGCAGTCAATGCAAAAGTTGACGAATGGAAGAGAGTATTGTCTTCAAAGGATGAGGAGATTGTGGAATACCAGCAGATGATAAGAGAGCTCAAAGACAGACTCCGAATGGTACAATTAGACTCCGACAAGAAAGATGTCATGGCTCTCCAGCAGGCTGTGCAGGAACGAGACAGTCAGATAAAGATGCTGACTGACCAAGTCGAACAATATACGAGCGAGATGGAAAGAAATGCTGAAATGATTGAAGAACTCAAGAAACCACTTCAGAAAGATCGGGGACCTTCCATGCTTAAACAGCAGAGCGTAATTGAAGAACTTAAGAGAAAAATCCAGGATGCCGAGAGGAAGGTACAGGAGGCTAAAAGGGAAGCTGAGATGGCAATATCTGATGCAGGAGAAAAGGACAAAGAACTGAGTGAGGCTCTGGCACGCATGAGAGCATATGAGGCTGGTGAATATGGCCTAGAAAATGCTGTGGCAGAAATCAAAGAATGTAAAAAACAGATAAAGCTCAAGAATAATCACACCGAGTCTCTGATCAAAGACATCAATAAacttgaaatgaaaatcaatgaCTTGTTGGAAGAAAATGAAGACTTCAGAGAACGCTTGGGACTTAATCCAAACGAAGTTGTTGATTTGACTGAATTTCGAAGATCTAAGGCTTTAAAACTACAGCAGTGCACATTGGAAAACAAGACTCTTTTAAACCAGATTGCAAGTCTAGACGAAGAAAGACTGAACCTGAAGAGGCACATCAGAAGACTTGCAAAAGACAAAGTGAGTGAGTTGTCGCTGGAAAATAAGCAGCTTGACCAAGGAATGAAAGAAATACTGCAAGCAATTAAAGAATATCCAAAGAATTCACAGAGAGAAACCGGTCTCAATATTCCCAGTCTTGAAAGACTTGTCAGTGCGATTGAGATGAAGAATGCAGACGGGAAGTTTGATGCTAGTGTGCACCTAAAGGCTCAGGTTGACCAGCTCACGGGGAGAAATTTTGAACTGAGAAATGCAATGACAGAAGCTCGTAAAGAGGCATCAAATGCATTGAGCCAACTGTTGAAAGCCAACGAAAAGATTGTACACCTGGAGAGTGAGGTAGAAGCATTAAGGCAATCGGGAGGGAGCAGCATTACTTTCAAGACTTTAAATCTTCCTGAAGAGATGGCCCCATCTAGTATGGAAGTCATCAGTTCTCTTAATGAATATGCAGTCAGACTTCTCCAGGAGCTTAACAACAAAGAAGAATCTACACAGCACTTGGAAGAAGTCTTAGAGGAGTACAAGCATAAGTTTGCTGTGATTCGTCATCAACAAGGACTTCTATACAAAGAGTATCAGAGTGAAAGAGAAGCGTGgcagaaggagaaagaaaaagctacAGAATTGATTAAAAAAGCTGAAGAGCAAAAGGAGGTTGATGCTGTGAGAATAAAAGAGTTTAATCATTGGCTTGAAGTGCTACAGACTGACCCATCAGAAATAAAGAAGCAGGTCTCTGAAGCGGCCCGTAAAATGACTGTTTTGCGGGTGAATGAAAAGTCCTTGACGAGGCGGTACACAACCCTGCTAGAAATGGAGCAGCACCTAcgtaaagaaaacaacaaactgaaGAATGAAAGCATTGCAATGGAATCTGCAGTAGCTGACAGAGTAGGTTACTTGCAGCGCTATAAGGACATGGCAGCTTTCAAAATCGCAGCCTTACAAAAAGCCTTGGATGACAGTGTCTCCTCTTCAGAACTCGAGAGGtcaaataaactgtataatgaaCTGACAAGTAAATACAGGGATGTTCTGCAAAAGGATAATCTGCTGGTTCAAAAAACAATGAATCTGGAACATTTAGAGGGTGAGAATTTGGTCCTTCAAGAACAAATTAATGGCTTAAACAAAGAACTGGAGATCACTAAAGAGAAACTTCATACATTAGAGCAAGCCTGGGAACACATCACTAAACTGGGCGGGGAAAGCTCAATGGATAAGGCAACCAAAGCAATTACAAACAGTGAAATTGTGTCCATCTCCAAGAAGATAACTATGCTGGAGATGAAAGAACTGAACGAGCGTCAGAGAGCAGAGCATGCTCATAAAATGTATGAGCATTTAAGAAGTTCTTTGAAACAAGTAGAAGACCGCAACTTTGAGCTGGAATCGAAATTTGCTGAGCTCAGTAAGCAAAATTTGGAAGCTCAAAAGATCGAGCAGGAGCTAAGAGATGAACTAGCCAGCAGTGTGAGTAAGGCAGTCAGTGATGCTCACAGAAGACGGATCACGGAGCTGGAGAAAATCGAGGCAGAGCTGAAAATTGAAGTTTCAAAGTTACGAGAGGTCTCGGATGTAGCCAAAGCACAAGTCTCTGCTTTAGAGTCTCACCAGCAGTCTAGAGAGAAGGAGGTGGAATCCCTGAGGAAGCAGGTGCTAGATTATCAGCTCCATCAACACATTGTGGCACTGCAAGTGAGCGAGGCCACAGCTGTCAGCAAACTGGAGGCAGCCATCGTGAAAGTGCAGAAGCTTGAGGCCTATAGCCTGCGTATGGAGCAGAAACTTGACGACAAGGAACAGGCCTTGTACTACGCCAGGCTGGAGGGGCGCAACCGCGCTAAGCACCTGCGTCAAACTGTGCAGGCGCTCAGGAGGCAGTTCAGTGGGGCCTTGCCTCTGCCCCAGCAGGAGAAGTTTTCTAAGACTATGATCCAGCTTCAGAACGACAAGCTGAAGGTCATGCAGGATATACAGTCGACTAAGGAGGATCGGAGGAAGgcggaggaaaaagccctggaACTGGAAGTCAAGATGAAGGGACTAGAGGAGCTGCTTAGCACATTGAAAGATGCTAAAGGAGCACAGAAGgtgATTGAGTGGCATAAGAAAATCGAAGATCTTCACCTTCAAGATCTAAAGCATAAAAGAGAGCTTGCCTCTCAAAATGAAGAGATAAAATACTTGAAGAGTGTAATTGCTGAGCTAGAACGGACAACTAGCAGACTAGAAGAGGAAATTGTTCAGCAAAACATTtttcATGAGGAACAGCAGCTGTCTTGGGATCAGAGAGAGGTAGAACTAGAAAGGCAGCTGGATCTGTATGAGCGGCAGCACAATGAAGTACTCAGCACTGCACAAAAGTTTGAGGAAGCACTTGGAGCTCTACCAGACCCCAGCTTGCCTCTGCCACACCAGCTTGACTTTGCTTTGGGGAAAATCAAAGAGCATGTCCGCACCATCCTAGAAACACGAGGAACCTGCAAGACGTTAGAAGAAAAACTTAAAGAAAAAGAGGCTGCTCTGTGGGAAGCAGAGCAAAACGTGCTTTCAAGGGACAAGGTCATCAATGAGCTGAGGCTGCGTCTGCCTGCTACAGCTGAGAGGGAAAAACTAATTGCAGAACTTGGGAAAAGAGAGGACGACCCAGAGTACCAACAGGCCATAAAAGTGGCCCATCAAACTATCGCCAACCTCCAGGCCAGGCTAAACCAGAAGGAAGATGTTCTGAAAAAATACCAGAACCTCTTGGCCAGAGCAAGACAGGAACAAGAAGATATTGCTAAGAAACATGAAGCGGAAGTTAAGGTTTTGCATGAGAAATTGGACTTGCATTCTGATACGTCACTTCACAAGTTCAAACAAACAGCCCTGGAATTGATGCAAAGGCCTTCCATGTCTGTCCCCACGTCAAAGCACCTGGTTCGCCTGGCTGAGATGGAGCAAACTGTGGCTGAGCAAGACAACTCACTTTCTAACCTCACAGAGAAGCTAAAGAGAGTAACAGCTGAGCtagaaagacagagacaaaTCACTGCATTGAAAATCAAGGAACAtgcagatgaaaaaacaaaGCTTGAAGAAAGACAAGCTGCTCATTCCAAAAGAATGCGTGAAGAAACAGATGCATTGCGTGTTCGCCTATCTCAGATGGAGAAGGAGGTTCAATATCTGAACACCGAACTGGAGGCACAGAAAGAAGCCAATATCCAGTCTCCCACCTCTACTATGAAAAATTTAGTGGAAAGACTTAAATCTCAGCTGGCtttgaaggaaaaacaacaaaagGCCCTCAGTAAAGCGCTGCTGGAACTCCGTTCAGAAATGACGTCTCATGCCGAGCAACAAATAATTGCAAGCGCGGCACAAAAGGAAGAAAACCTGAATGTCCAACAAATTGTAGACAAACACACCAAGGATTTGAAGTCCCGGGTTCAAGACCTAAGTGAGGAACTCCAAACGACAAAGGAAAATCTCAAAATATGCAAGACCAGGGAGAACTCTGTGAAAGAAGAGGTGGAAAGTTTGAACAGGGAACTGCAGAGGAGTCACAAGACTCAGAGCAAActgcaggcagagagagatgaGCTGCACAGAGAGAACGGAGAGCTGCAAAAGAAAATTAAGAGGCTCATGGGCGGGTTGCAGAATAAGGCGGATAGTGAAGGAAAGGGGGCCACAGTGGATGAACTTCAAAAGAAGGTACAACGACTGGAGTCTGAACTAGAAAGAAAGACTGCAGCAGAACAAGttgacagaaaaaatataaaagaagaCAAGACatcaaaagaagaaataatCAGGTGggaagaaagcaaaaaatggCAAGGCAGGCTGGAAGGTGTACGGaacaaactgaaagaaaaggagaaagaggtTGAGACTTTAACAAAACAGCTCAGCACCTTAAAGGACCTCTATGCTAGAATTGATCAGGAGAAAGCATCCTTGTTGAAAAAGATCAAAACTCGAGGTGTGACGGTGGATCAGGTTGTTGGAGCTCGAACTCTGGAGTCTGAAAAGGAGATTGAAGAATTGAAGAGGCACAATTCGGAGCTGGagcatcagattgttttaataaaacAACAGCAGGCTTTGCCTCGAGATGTAGCAATGGAAGAACTGAATTTGAAAAATCGATACTTGGAGGAAAAACTGAATTCCTTCGAAAGACAGCTTTCCAAAGAATCTCTTTCAAGACCTTCAACGTCTGGTAGGGGCACTGATACACCATCTCAGAGAGAGCATGAGCTGCAGAGAGAAAACCTCAAGCTATCTTCAGAAAACTTGGAACTGCGATTCCAgttggaacaaacaaacaaggactTGCCCAGATTGAAGGACCAAGTGGCCAACCTTAAAGAGATGTGCGACATCCTAAAGAAGGAGAAGGCTGACCTTGAGAGAAAACTCGGCAACGTCCGTGGGTCTGGACGTAGTGGAAAGACAGTCCCCGAACTGGAAAAAACCATTGGGCTCATGAAGAAAGTGGTGGAGAGAGTCCAAAGAGAAAACGAATCCCTGAAGAAGGCCCCCGGAGTTGTTTCAAGGGACCAGCTAACagctttggaaaatgaaaatgaaaagctcaAGTCTGaatatgaaaaactaaaactacagATGGGAGGTCAGCTGAGCATGAGATATGAATCAAAGACAAAGGGGATGGAGAAGATTATTGCGGAGAATGAGCGTCTACGCATGGAGCTTAAAAAGgaAACAGAAGCAGCTGAAAAATTGAGAATTGCCAAGAATAATGTTGAACTCACAAACGAGAAGCTAATGGTACAGCTGGAGGAGACCAGTAAGAGGCTGAGCTTCGCTGAAACCAGAGGGCCACAGCTCGAGGGAGCAGACAGTAAGAGTTGGAAATCTATTGTGGTAACAAGAATGTATGAGAGTAAAATGAAAGAACTCGAATCTGATATCGTCAGGAAAAACAGCAGTCTTTCAGACCTGAAGCAGCTGTTACGAGAAGCTGCTGAACGggagcagaaaaacaaacatgtcatCAGTGACTTAAAAGAGCAGATTGAGCTGCTGAAACATTTTCCAGAGGAAGCGAAAACAGAGTCAGGTCTTGTAAGGGAGCTGCAGCTTACCAGgCTGACAAACAGTCGtctggagaaagaaaaggtaGAACTTGTTCACCAGCTAGATGTGTATCGACAACAGAGCGGGGCAGTTGACAGTGCTGCTGAGCCTGGATATGACGAACTCCTGCAGAAAGCCATGAAACATGATACATTGATGGAAGATTTAGTTGACATGCAAACCCAGCTTAAGTCTGCAGATCTAGATAAAAGACATTTACAGGAAGAAgtaaaaaagatgaaaaaagaacTGGAAAATTTTGACCCTACATTCTTTGAAGAGATTGAAGATCTGAAATTCAATTACAACTTAGAAGTGAAAAAGAATATTCTTCTGGAGGAGAAACTGAAGACGCTGTCAGACCGGTTTGGACTTCAGGTTGACATTCCAACTAATGTGTCCATCGACTGA

Function

GO:

id name namespace
GO:0021549 cerebellum development biological_process
GO:0043010 camera-type eye development biological_process
GO:0048793 pronephros development biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0015031 protein transport biological_process
GO:0007369 gastrulation biological_process
GO:0060271 cilium assembly biological_process
GO:0030916 otic vesicle formation biological_process
GO:0005813 centrosome cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K16533 CEP290, NPHP6; centrosomal protein CEP290

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140283 lncRNA downstream 1011950 17108977 ~ 17327586 (-) True G112020
TU140287 lncRNA downstream 1204020 17128317 ~ 17135516 (-) True G112024
TU140191 lncRNA downstream 1437999 16898419 ~ 16901537 (-) True G111945
TU140448 lncRNA upstream 32701 18399263 ~ 18408777 (-) True G112140
TU140510 lncRNA upstream 328510 18695072 ~ 18744463 (-) True G112195
TU140511 lncRNA upstream 328510 18695072 ~ 18745217 (-) False G112195
TU140523 lncRNA upstream 517066 18883628 ~ 18886046 (-) False G112205
TU140524 lncRNA upstream 517066 18883628 ~ 18886046 (-) True G112205
AMCG00006756 mRNA downstream 2484 18218916 ~ 18337052 (-) True AMCG00006756
AMCG00006757 mRNA downstream 121087 18218173 ~ 18218449 (-) True AMCG00006757
AMCG00006747 mRNA downstream 347637 17988029 ~ 17991899 (-) True AMCG00006747
AMCG00006745 mRNA downstream 384715 17945016 ~ 17954821 (-) True AMCG00006745
AMCG00006746 mRNA downstream 546077 17771967 ~ 17793459 (-) True AMCG00006746
AMCG00006755 mRNA upstream 49354 18415916 ~ 18486164 (-) True AMCG00006755
AMCG00006759 mRNA upstream 169487 18536049 ~ 18603662 (-) True AMCG00006759
AMCG00006758 mRNA upstream 275822 18642384 ~ 18646768 (-) True AMCG00006758
AMCG00006760 mRNA upstream 286942 18653504 ~ 18688236 (-) True AMCG00006760
AMCG00006761 mRNA upstream 330179 18696741 ~ 18712396 (-) True AMCG00006761
TU140351 other downstream 706091 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 2586301 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 3585566 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 3585566 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 3975114 14360228 ~ 14364422 (-) True G111489
TU140642 other upstream 1266675 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 1869294 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 2487495 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 5037613 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 8133453 26500015 ~ 26500681 (-) True G113530

Expression Profile