RNA id: AMCG00006758


Basic Information

Item Value
RNA id AMCG00006758
length 2953
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00006758
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 18642384 ~ 18646768 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCGCGGCGGCAAGTGTGTCTGTTGGAGAGGACAAAGATCAGTCCAGCAGCATAAAAAGCAAGGACGTTGAGTGAACGAGTGCATTCTGAAATCAGGTCAAGACGCTAAAGGGCTGCAGCGGGTCTGAAACCCACCACCATAGGTACACAACCACCCAAAAAGACGCCTGCACGGGATTGAGATACTGCACACTGCAAGAGTAGCTGCTCCATTCAGGGATTCATTGATGAATGCACGGGCATGCCTTGCAGGATCCTATGAATGGGGACTAGTCTAAGAGACGTCTGCAGTCCAGTATTCATCAGCGCTTTGGcaaattattgatttttCCTCTGCCGGGCACTCATGCTAGATAAATTCAAAAACCTCCCATTTGAATCGGCAATGGCGATCAGCAAGACCGTGGGCTGGCTGAAGGAGCAGCTGCAGAGCCGGAGCGACGCGCTGCTGGTGATGGACTGCCGAGCCCAGGAGCTCTACGAGTCCTCGCATGTGGAGACGGCCATCAACGTGGCCATCCCCGGCCTCATGCTCCGGCGCCTCAAGAAGGGCAACCTGCCCATCAAGTCGCTGCTGGCCAACGGGGAGGACAAGGAGAGGTTCGCCCGGAGGTGCAAGACGGATACGATCGTCCTGTACGACGAGTACAGCCGGGACTGGAACGAGAATGTGGACGGGGGCTCCGTGCTGGGCTTGCTGCTGAGGAGGATGAAGGATGAAGGATACAAGGCTTTCTACTTGGAAGGCggtttcaatacatttcaagcCGAGTTCCCCGGCATGTGCGAGACCAATCTGGACAGCtcttcctgcagcagctcccCCACGGCCCCGGTGCTCGGGCTCGGGGGGCTCCGCATCAGCTCCGATTCCTCCGACATTGAATCGGACATCGACCCCCACAGTGCCACCGACTCGGACGGCAGCCCCCTGTCGAACACGCAGCCCTCCTTCCCCGTGGAAATCTTGCCCCACCTGTACCTGGGCTGTGCCAAGGACTCCACCAACCTGGACATTTTGGAAGAGTACGGCATTAAGTACATCCTCAACGTGACCCCCAATCTGCCCAACCTGTTCGAGAACGCGGGGGAGTTCAAGTACAAGCAGATCCCCATCTCTGACCACTGGAGCCAGAATCTCTCCCAGTTCTTCCCGGAGGCCATCAGCTTTATCGaTGAAGCTCGCAGCAAGAAGTGTGGGGTGCTGGTCCACTGCCTGGCTGGGATAAGCCGGTCGGTCACAGTCACCGTGGCGTACCTGATGCAAAAACTCAACCTGTCGATGAATGACGCCTATGATATCGTGAAGATGAAGAAATCCAACATCTCTCCGAATTTCAACTTCATGGGTCAGCTGCTGGACTTTGAACGGACCCTCGGCCTGAACAGCCCCTGTGACAACCACCGCATCACAACACAACCCTTGTATTTCACCACGCCGACCAATCACAACGTGTTCCAACTCAACCCCCTGGAGTCCACGTGAGACCCGGAGACCCCGACCTCGAGGCGTGGGCTCCTGAAATCATCTTCCGTCTTCTGTCAAGCAACTTGACattatttacacagctgggcTGATATGACAGCTGCTGGGCGTGTTTGCTGAAAAACACGGCATACTAAAGCATAGGAGCAGCTGTTGCAGAGGGAGAAAAGAGCTGTAACTCAGGCTCTCGCTGTCTCTTGGACTCAAAGCGTTTAATTGTCCCAAAggttagaagaaaaacaaaggtgcACAGTTGCATGTGTGCAGCAGACTGGGAAGCTAAGTATTCCAAAGAAAATGGATGGTTGAACTGGACATTTAATTAGCACTTGCACCTGTAGACTTTTTCAAGCTTGGGtgtatttttcttgtcttcAGTGAAGACTAGCCTAGCGTGGGGGGAGAACACCTCactgaatgaaggcagtgttctcaaattctgtttttaatggagTAATGTtgaaagattatatatatatatgagagagagagagatctacaTATGAGTAGCGAAGCATTGCTCTTGTGTGTCAGAATATACCCTTTTAAAGATCAGTGGgtactgtttttaattgtattttttcctctgTTTCATGTAAGCATCCAGAGTATTGATCAATAGATCTGTTTCATATGCCAAAAAGAGACTAGGTTTTcaagattttaaatgtgtatatgtaatatatattttttctggttgAATTTGACCACATTTCTGATGTTTAATATATGGGTTTCATCCACAGGCCTTTTTTTTGTAACTATACACACTTAATTTTATGCCTTAGttctgtaaatacaaatataatgacCATGTTACCCCTAATTGGGAAGTCTGATATGCTTTTCAGATCCCTGAAGTACATTTTtcactgattttaaaattatcaCCACAGCTTTTTTTGTCAAAAGTATACAGATCTACCAAGACACACTGCATcctaaaatacagtatttcatttaaattaataactttaagtgttaaaaaaaaatgtatatctgtcATACACTTTGTAGTGGTGACTTGAGTTCAAATTCCATGGTGCATGCAACTGAATAGATATTTTAGAATTGTTAGTTATAAGATGCAATATCCGATGGGGATTAAAATCGAACCAAAcctttgttttttgggggaacCTAGGAGGTTGAAGACAAGGAATGTAACATTTTGGTAAAGGTTCTGATTGGACTATTCGTATGGTATCTGGATATGCTGACGGCTGTTTCTCTTCAGGGAtcttcaaattcaaatgcaaaagaactacaaatgcaaatgttattttgttaaaaggagaaacaaaattaTGGAACTTGTTTTTCTGCTGCCCTTGAGGAGCTGGCCAATGGAGAGTGACCCTCCCCCTCCGCCTCCATCACCCTGAGGTGTGAAGTGGGGCATTGAGTTCATCTTAagaatgtaaaaacataaattattaataaataattattttgtctatTCTGAA

Function

GO:

id name namespace
GO:0060420 regulation of heart growth biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0070373 negative regulation of ERK1 and ERK2 cascade biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0000188 inactivation of MAPK activity biological_process
GO:0040036 regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0005829 cytosol cellular_component
GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K21946 DUSP6; dual specificity phosphatase 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140448 lncRNA downstream 233607 18399263 ~ 18408777 (-) True G112140
TU140283 lncRNA downstream 1314798 17108977 ~ 17327586 (-) True G112020
TU140287 lncRNA downstream 1506868 17128317 ~ 17135516 (-) True G112024
TU140194 lncRNA downstream 1740847 16898419 ~ 16901537 (-) False G111945
TU140193 lncRNA downstream 1742491 16898419 ~ 16899893 (-) False G111945
TU140510 lncRNA upstream 48304 18695072 ~ 18744463 (-) True G112195
TU140511 lncRNA upstream 48304 18695072 ~ 18745217 (-) False G112195
TU140523 lncRNA upstream 236860 18883628 ~ 18886046 (-) False G112205
TU140524 lncRNA upstream 236860 18883628 ~ 18886046 (-) True G112205
TU140596 lncRNA upstream 762051 19408819 ~ 19418420 (-) True G112270
AMCG00006759 mRNA downstream 38722 18536049 ~ 18603662 (-) True AMCG00006759
AMCG00006755 mRNA downstream 156220 18415916 ~ 18486164 (-) True AMCG00006755
AMCG00006754 mRNA downstream 275822 18339536 ~ 18366562 (-) True AMCG00006754
AMCG00006756 mRNA downstream 305332 18218916 ~ 18337052 (-) True AMCG00006756
AMCG00006757 mRNA downstream 423935 18218173 ~ 18218449 (-) True AMCG00006757
AMCG00006760 mRNA upstream 6736 18653504 ~ 18688236 (-) True AMCG00006760
AMCG00006761 mRNA upstream 49973 18696741 ~ 18712396 (-) True AMCG00006761
AMCG00006766 mRNA upstream 240837 18887605 ~ 18903547 (-) True AMCG00006766
AMCG00006762 mRNA upstream 268234 18915002 ~ 18920800 (-) True AMCG00006762
AMCG00006763 mRNA upstream 292382 18939150 ~ 18962560 (-) True AMCG00006763
TU140430 other downstream 301174 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 1008939 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 2889149 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 3888414 14725651 ~ 14753970 (-) False G111621
TU140642 other upstream 986469 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 1589088 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 2207289 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 4757407 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 7853247 26500015 ~ 26500681 (-) True G113530

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000055_05450546_05453791.mRNA True 2424 mRNA 0.50 5 CI01000055 5450179 ~ 5454525 (-)