RNA id: AMCG00006760


Basic Information

Item Value
RNA id AMCG00006760
length 1473
RNA type mRNA
GC content 0.54
exon number 12
gene id AMCG00006760
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 18653504 ~ 18688236 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGGACCCTTCTCTAGATCGTAATTTTAAAGGTCACAAAGATGCTGTCACCTGCGCAGACTTCAGTCCAACTAACAAGCAGTTGGCGACTGGGTCAGCAGATACATTCCTGATGATTTGGAATCTGAAACCAAAGGCCAGAGCATTTCGTTTCATGGGTCATAAAGATTTTGTCACCAGTGTCCAGTTCTCTCCATCCGGCAACTTGGTTGTCTCCGGATCTCGGGACAGAACAGTGCGGCTTTGGACGCCCAGCATTAAAGGCGAGTCAACAGTGTTCAAAGCTCACATGGCTACAGTGCGCAGTGTTGCCTTCTCCAAGGACGGGCAGAAGTTGGTGACGGCTTCCGATGACAAATCCGTGAAGGTGTGGAGCGTCCATCGCCAGCGCTTCCTATTCTCTTTAAACCAGCACACCAACTGGGTGCGCTGTGCCCGGTTTTCACCAGACGGACGGCTCATCGTCTCTTGTGGTGACGACCGGTCGGTACGGGTATGGGACACGACAAGCAGACAGTGTGTCAACACCTTTACGGACTATGGGGGGTCAGCAACCTACGTGGACTTCAATTCCAGCGGGACCTGTATAGCCTCCTCAGGGTCAGATAACACCTTGAAAATCTGGGATATACGTACAAACAAGCTCCTGCAGCATTACCAAGTTCACAGTGCTGGGATCAACTGCTTTTCCTTCCACCCTTCTGGTAACTACCTCATCAGTGCATCCAGTGACGGCACCGTAAAAATCCTGGATCTGCTGGAGGGGAGGCTTATTTACACCCTGCACGGGCACCAGGGTCCTGTCCTTACTGCAACTTTTTCTAGTGGAGGGGAATACTTTGCTTCAGGAGGCGCTGACTGTCAGGTTTTGTTGTGGAAGACCAACTTTGATGCGTTTAACTACAAGGAAATTCTAAAAAAGCACAACAGCCGTATCAATCCAGACCCACCCCCACACCTGAGCGACATCCACCCCCGGATGCCCCATCTGCACACAGCGCGCGACGCCTGCATCGAGATTGGTCCCTTCGTGGCAGATACACAGACTCCAGATCCGCGGGTCGTTGAATTAGGGCAGTCTCTCTTTTCAAACACGGGAGGAAGCAGGCGTGAGAACGGAGATCCAGGACCTAGTGGCTGGCCCGACTGTAACACTTTCCAACCTCCGCACCGGTCTACTGGAGGacaggaggaagagggggagacgTGTGCCGTGACCTTTCCCTTGGAGGAGCGCACGGGCTTCCCGTCGGGACTTGCCCGGACTCTGGAGCAGATTGTGGAACAACTGGATGTCTTGACACAGACGGTTTCGGTGCTGGAGCAGCGGCTGACTCTCACTGAGGACAAACTGAAGGAGTGTTTAGCCAATCAGGCGCGGATCGTGCTGCAGGTGCGAGAGGCCGAGGAGAGGGATGCAGAGATCAAATCTCACAGCTCTTCACTGTGTTCGGTGCTGAGCTGCGGCCGTTAG

Function

GO:

id name namespace
GO:0003014 renal system process biological_process
GO:0060287 epithelial cilium movement involved in determination of left/right asymmetry biological_process

KEGG:

id description
K16482 POC1; centriolar protein POC1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140448 lncRNA downstream 244727 18399263 ~ 18408777 (-) True G112140
TU140283 lncRNA downstream 1325918 17108977 ~ 17327586 (-) True G112020
TU140287 lncRNA downstream 1517988 17128317 ~ 17135516 (-) True G112024
TU140194 lncRNA downstream 1751967 16898419 ~ 16901537 (-) False G111945
TU140193 lncRNA downstream 1753611 16898419 ~ 16899893 (-) False G111945
TU140510 lncRNA upstream 6836 18695072 ~ 18744463 (-) True G112195
TU140511 lncRNA upstream 6836 18695072 ~ 18745217 (-) False G112195
TU140523 lncRNA upstream 195392 18883628 ~ 18886046 (-) False G112205
TU140524 lncRNA upstream 195392 18883628 ~ 18886046 (-) True G112205
TU140596 lncRNA upstream 720583 19408819 ~ 19418420 (-) True G112270
AMCG00006758 mRNA downstream 6736 18642384 ~ 18646768 (-) True AMCG00006758
AMCG00006759 mRNA downstream 49842 18536049 ~ 18603662 (-) True AMCG00006759
AMCG00006755 mRNA downstream 167340 18415916 ~ 18486164 (-) True AMCG00006755
AMCG00006754 mRNA downstream 286942 18339536 ~ 18366562 (-) True AMCG00006754
AMCG00006756 mRNA downstream 316452 18218916 ~ 18337052 (-) True AMCG00006756
AMCG00006761 mRNA upstream 8505 18696741 ~ 18712396 (-) True AMCG00006761
AMCG00006766 mRNA upstream 199369 18887605 ~ 18903547 (-) True AMCG00006766
AMCG00006762 mRNA upstream 226766 18915002 ~ 18920800 (-) True AMCG00006762
AMCG00006763 mRNA upstream 250914 18939150 ~ 18962560 (-) True AMCG00006763
AMCG00006764 mRNA upstream 312691 19000927 ~ 19002781 (-) True AMCG00006764
TU140430 other downstream 312294 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 1020059 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 2900269 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 3899534 14725651 ~ 14753970 (-) False G111621
TU140642 other upstream 945001 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 1547620 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 2165821 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 4715939 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 7811779 26500015 ~ 26500681 (-) True G113530

Expression Profile