RNA id: AMCG00006763


Basic Information

Item Value
RNA id AMCG00006763
length 3754
RNA type mRNA
GC content 0.38
exon number 8
gene id AMCG00006763
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 18939150 ~ 18962560 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGGTGTCAGCCTGTGCTGTATTCATTGACGGAGACTTgcctcttttccttttttcctccttcttgtGGTTCCTTCTCCTTTGGAAAAGGAGCACAGAGGGAGTTATCTACCAATTGTCATCCATTGAAAGAGGACTGACGGGACCCTCCCTTTCTTTGCCCCCACCTCCTCGTCCAGCTTCACACACCTGCTTTGCTTTGGCTGAGCACTTTTTTAGTGCAATTACGCCTCGGCCTTGAGAGCTGCACTTCTAAAACCCCCACTGGATTTGGGAAACAAAacacccccaaaaaacaaaagaacacagGTCTTATCAGCATCTGCACTGACAGGAAAATGAAGTCAGCCTATATTTTCCTACTACTGGTAACAGTTTGCTGGGCCCTGCCTTTCCAGCAGgtagatttatttgatttcatgaATGATGATGGTTCTGGGTTAAACTCAACTGATGAATCACTAATACCAGCTGAGTCAACATGTCCCTTTAAATGCCAGTGCCACCTTCGGGTTGTGCAGTGCTCTGATTTAGACTTGCAGAACAACAAAATcacagaaattaaagaaaatgactTCAAGAGTCTGAGGATTCTACATGCATTGATTCTTGTCAACAACAAGATCACCATCATTCACCCCAAAGCGTTCCTGCCTCTGGGGAAGCTGCAGAGACTCTACCTGTCTAAGAACCTACTGAAGGAAATGCCCGTGAACATGCCCAAGAACCTGCAGGAGCTGCGCATTCACGAAAAcgaaataaccaaaataaagaaGTCGTCATTCGAGGGAATGGCTCAAGTCATTGTGATGGAGCTGGGCTCAAACCCACTGAAGAGCGCAGGAGTTGACATCGGTGCTTTCCAAGACCTCAAAAAGCTGTCCTACATCCGAATTGCAGACACCAACATCACTTCTATACCTAAAGGTCTTCCCAGTTCCCTGTCTGAGCTCCATTTGGATAGTAATAAAATTTCCAAAGTAGATGCTGACAGTCTGAAGGGCCTCAAAAATCTGGCAAAACTCGGTCTGAGCTTCAATGAGATTTCCACTGTGGAGAACGGGTCCCTTGCTAACGTGCCCCATTTGAGAGAGCTGCATCTGGACAACAATGGTCTCACTAGTGTGCCCCCTGGCCTGCCAGATCACAAATACATCCAGGTCATCTATCTCCACAACAACAAGATTGCTGCAGTGGGAACAGGGGACTTCTGCCCTCCAGGCTACAACACAAAGAAGGCCATGTACTCTGGCATCAGCCTTTTCAGCAACCCTGTGCCTTACTGGGAGGTCCAGCCCATCACCTTCCGCTGTGTCTTTGACCGTTCTGCCATCCAGCTTGGAAACTACAGGAAGAAATAAACCTGCGTATCAGTCACCATGCTGACCCTCCCCTAGGCCCAGTCCTTACATCGTGTTTTAAGAGAATCGCCAttggtattgtatttttatattccaagAATACCCATTACTGGAATCTGGCATTTTGTCATACAAATTGTTGACGAACATCACAAAAAGAAGATGTAAAAAGTATCCCGCCATTttaggaaacaaaatgtattacacatttaaCCCTTCATTATTCTTGTaaagcagaatttaaaacaaaataaccagaGGTTGTCATTAATGATCCATTAGTGAACCCATACATGTTTTCAACACATTCCAGATGATAATATCCCAGAGAAAGTTTGGTCAGCTGTCCTGCTGAGCAGGCTGCTAAAGGGGTTAACCTGTGTCTAAAGGAACCCTTAGCTAAAGACGGTATAGCTATACTAGTGTTGTATGAAATGTGTTGTGCTAGTATGAATGAAATGTACCACTGAGATACAGAGTGCACCCTGTAGTGTACTACTTTTCATTCTgtagaaaaaaatgatttattatgtcacatttgaaaacattttatttcctctgcTTGCTTTTGAgtgttatttctttttctttttttttttgtcgtccACCTATAATTTTTCTAAAGAACTTTAAGCACATTTCCAAATGGCCACTGTAAAGTCATTTAGACCAAATCCAGGATAAATGCAGTTCTGAAAGCTGTagaataaacaatatacacataCCCATAAATGTGTGGTCAGAAGAACTATACGCAtgctttttcattgtatttcccAGGTGTTTACGGACTGCAGCtttgataatattttaatgtctgGAGTGGAATGGAGACAGGTGGCTCATCACACCCACCATGCTCATATTTGAATGTTATATGTATAGATACTGTATATACAAGCTGTATAAACACCTTATTGCTTTTAAGCACTAGCACTTACAGTACATTAGTTTAATAtatcagcaaaacaaaagtaaaccaTGTGGGTTTGGGTGGTTCAGTTCAGTTGTCCTGAGCGAAATAAAGGTTATAGAACATCTACGGTGTCACAAACAAGTCTGTGATCCACAATGAGGGCATTGCTTTATTATGCATAACTTAACTTgcgttttttatttgtattcttcgTTAGGTATGACAACATTGGGCTTAATTAGCAACAGTGCCATCAGATACAAAGAGACTGTCCATTCTTGGGTTTCCCTGCCATTTATTCCCTGGAATCTACAAAATGAAATTGCAAAATTGAATATTGATGTAATAATGGCTAATACCTACTGGGGACTGAGCTCAGACTACCTTTCATTTTGGGTTCAAACAAAGCAGGAAGAATAGAGAACACATGCAGTCTGTTACCCAGTGCTATGTTGATGAGGTTATTAACCAAATGAAAcattgaatatttttaatttttatcaGAATAAAAGAGTAGTGTTAATCATATgcatttttcctgttatttctaACACGTTCTTCATCCGATTAAGTGTATTCTCTGCAGTCACCCCTGCTTCTGTTTAATAGCAGATAGAAATctatttaatggaaaaaataaatgctgaattaGATCAAACCTTTTAGGGAAACACTATTggttaaacaataataaaccatAATAATGTTTCATTCCAACACATGAATACAACCAAATGTTTCATAACACTGGTTaagatgattattttaataaaagtctGAAAAAAGCTCTACCTGCTTTTTATCTATTTTGGTGGATTTAGAAATATATGAGAGATAAGTCTGAAcatttataacaaataataatcttaacaaATGTGTATGAATTGAACATTTGCAGCctttttaacaaatatacatttttggcTACAGTATTTAGTAATGATGTATGAATGCACAGAAACCATGGTGTAACAATGAGTTGCTTCCTCTGTGTATTTcctaacaatatattttgtgttttcagacTTTTCTGTAACATGTGCTTAGCAAGACTCACACTAAGTAAAGATAATCTCAAAGAATACATATGtctttacattatattacaacaagaatacaaaacacaatgtccATTAAATTCCAGTTAATTGCAAGAACACCTTTTGGAGTTAATTTCACTTTCCCTTACACAGTCCCTGAACATTTTGCTTTACATATTAATTGTGAAGAATAATATGAATTTCTTCATTTAGCCTACTTTTTTCTGGAATGGCAAATTACACTGTTGTAGCTGCCTTTGTAGAATTGTGTACCTTTTGCACAATCTAGAAATTAGTTCTGTAAATATGTTactattttagttatttatttagttattattaactTGTGTAGATAAACTGCTCAGCCATTTTTAACCCTTGACCCATCTGAAGATGTATGGCATCtggaatgaataataatactgatattaTTAAAC

Function

GO:

id name namespace
GO:0050654 chondroitin sulfate proteoglycan metabolic process biological_process
GO:0051216 cartilage development biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0005518 collagen binding molecular_function

KEGG:

id description
K04660 DCN; decorin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140523 lncRNA downstream 53104 18883628 ~ 18886046 (-) False G112205
TU140524 lncRNA downstream 53104 18883628 ~ 18886046 (-) True G112205
TU140511 lncRNA downstream 193933 18695072 ~ 18745217 (-) False G112195
TU140510 lncRNA downstream 194687 18695072 ~ 18744463 (-) True G112195
TU140448 lncRNA downstream 530373 18399263 ~ 18408777 (-) True G112140
TU140596 lncRNA upstream 446259 19408819 ~ 19418420 (-) True G112270
TU140614 lncRNA upstream 552239 19514799 ~ 19515004 (-) True G112287
TU140615 lncRNA upstream 574645 19537205 ~ 19537793 (-) True G112288
TU140616 lncRNA upstream 578543 19541103 ~ 19541968 (-) True G112289
TU140617 lncRNA upstream 602396 19564956 ~ 19566015 (-) True G112290
AMCG00006762 mRNA downstream 18350 18915002 ~ 18920800 (-) True AMCG00006762
AMCG00006766 mRNA downstream 35603 18887605 ~ 18903547 (-) True AMCG00006766
AMCG00006761 mRNA downstream 226754 18696741 ~ 18712396 (-) True AMCG00006761
AMCG00006760 mRNA downstream 250914 18653504 ~ 18688236 (-) True AMCG00006760
AMCG00006758 mRNA downstream 292382 18642384 ~ 18646768 (-) True AMCG00006758
AMCG00006764 mRNA upstream 38367 19000927 ~ 19002781 (-) True AMCG00006764
AMCG00006765 mRNA upstream 43820 19006380 ~ 19046061 (-) True AMCG00006765
AMCG00006767 mRNA upstream 132976 19095536 ~ 19134727 (-) True AMCG00006767
AMCG00006768 mRNA upstream 344571 19307131 ~ 19336296 (-) True AMCG00006768
AMCG00006775 mRNA upstream 440721 19403281 ~ 19407976 (-) True AMCG00006775
TU140430 other downstream 597940 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 1305705 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 3185915 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 4185180 14725651 ~ 14753970 (-) False G111621
TU140642 other upstream 670677 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 1273296 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 1891497 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 4441615 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 7537455 26500015 ~ 26500681 (-) True G113530

Expression Profile