RNA id: AMCG00006764


Basic Information

Item Value
RNA id AMCG00006764
length 1626
RNA type mRNA
GC content 0.44
exon number 2
gene id AMCG00006764
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19000927 ~ 19002781 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAGAGTGGAAGAACATCTCCAAGAAACAGGAGAGTTTCACAGTGATCCCTACTtcaagtatttcagagaaaaataatggTATTCAGACTAAGGGGTTCCTAAAGGAAGCAAGAGTCTCCACAGATGGCATTAAGAAGAACATCTCCTTGCCTTTCAACATGACATTTAACTCAAATTCCTCCCAAAGGGAAAGTGAAGTGTATGTTCCTGCTTCTTTAGAGCTAAAGCTCTCCCCATCCGCTGTGGAGGTCATCGGCTTGAGCTCGACCACACGAGAGCAACATCCCGAGGAGCAAATCACAAGAGGTGTGAACAGAAAGTCAAAGCCTAAAAAGGGGACAAGCTCCCCAGCCAATGACCCCAAGGCCAAGAATAACAAGTTATCTCATTCAAAGAGAAACAAGAACTCTATCAAGAAccacaaagcacaaaaaaaagccaagacgaaagcaaaactgaagaagaagaagaaaaaaaagacatattttccatattttaaagacaattaCTGTCCCCCAGAATGCGCTTGTTATGGAAGgGTGGTCCAATGTTCTGACAAAGGAGTGGATAAAGTCCCATATGGCATTCCATACAATGCCAGGTACATGCTTCTCATGAACAACAAGATAGACATGATCCAGCTCGATCTACTGAATGAATACCTCTCTCTTGAGTTTCTGGTGCTCAGCAACAACCGCTTGACCGATGGGTCCATTGAAGGAGCCTTTGAGGGAATGATGAAGCTAAAAAGACTTTATATCAACCAAAATCTCCTGATCAGCATCCCCACAGACCTTCCTGCAACCCTGGAGGAGCTGAGTCTCAATGGCAACAACATTAGTGTCATGTCAAAGCAATCATGGTCCAGCTGTGAAAGTCTGCACATCCTCAGCCTCAACAATAACAGCCTGTCAAATGATTCCATCCCTGCTGGGATTTTTGGCTCCTTGACTAACTTACGCACTCTTAGTATTAACCACAACTATCTAACAGACGCCCCACACAGACTTCCCACTAATCTCAGAGAACTGTATCTGAGTGGAAATCAAATAGACAGAATTTCCGACCAGCTGTTTGCCGATAACTCTGACCTGCTTTTTCTTGATCTTGGCCACAACCGTCTCAAAAACAAAGGAATAGATGCAATTTCCTTCCGGCACATGGCTAAACTTGAGAACCTCAATCTAGAGAGAAATTTCCTCACTCAGGTCCCAAAGCATATTCCACGTGCCTTAAAGACCCTGAATCTTGAGGGCAACCGGATCAGCTCAGTGAGtaaaagtgttttcttaaaACTGGCAAACCTGGAGCAACTCGGGCTGTCTAAGAATAAAATTGCCAAGGTGGCAGCGGGCGCTTTCAAGGGACTGTCTGCATTGCACCTCCTAGATGTTAGTCACAACAATCTCCTTGAAGTTCCCCGGCAACTCCCTGCGACACTGCACTCCATAGCTCTAAATTATAACCAGATTCGCTTGATCCCTCTGGACTCTTTTTGTGGACACAGCTTTTCACAGAGCAATCTAGTCCTCGTCCATTTGGAGAACAACCATATTGACATGGGGGAGATTGACAGTCATGCATTCAGGTGCCTCAGAGGCTTTCAAATTGTCCACTTCTAA

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140523 lncRNA downstream 114881 18883628 ~ 18886046 (-) False G112205
TU140524 lncRNA downstream 114881 18883628 ~ 18886046 (-) True G112205
TU140511 lncRNA downstream 255710 18695072 ~ 18745217 (-) False G112195
TU140510 lncRNA downstream 256464 18695072 ~ 18744463 (-) True G112195
TU140448 lncRNA downstream 592150 18399263 ~ 18408777 (-) True G112140
TU140596 lncRNA upstream 406038 19408819 ~ 19418420 (-) True G112270
TU140614 lncRNA upstream 512018 19514799 ~ 19515004 (-) True G112287
TU140615 lncRNA upstream 534424 19537205 ~ 19537793 (-) True G112288
TU140616 lncRNA upstream 538322 19541103 ~ 19541968 (-) True G112289
TU140617 lncRNA upstream 562175 19564956 ~ 19566015 (-) True G112290
AMCG00006763 mRNA downstream 38367 18939150 ~ 18962560 (-) True AMCG00006763
AMCG00006762 mRNA downstream 80127 18915002 ~ 18920800 (-) True AMCG00006762
AMCG00006766 mRNA downstream 97380 18887605 ~ 18903547 (-) True AMCG00006766
AMCG00006761 mRNA downstream 288531 18696741 ~ 18712396 (-) True AMCG00006761
AMCG00006760 mRNA downstream 312691 18653504 ~ 18688236 (-) True AMCG00006760
AMCG00006765 mRNA upstream 3599 19006380 ~ 19046061 (-) True AMCG00006765
AMCG00006767 mRNA upstream 92755 19095536 ~ 19134727 (-) True AMCG00006767
AMCG00006768 mRNA upstream 304350 19307131 ~ 19336296 (-) True AMCG00006768
AMCG00006775 mRNA upstream 400500 19403281 ~ 19407976 (-) True AMCG00006775
AMCG00006776 mRNA upstream 566953 19569734 ~ 19593231 (-) True AMCG00006776
TU140430 other downstream 659717 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 1367482 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 3247692 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 4246957 14725651 ~ 14753970 (-) False G111621
TU140642 other upstream 630456 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 1233075 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 1851276 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 4401394 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 7497234 26500015 ~ 26500681 (-) True G113530

Expression Profile