RNA id: AMCG00006765


Basic Information

Item Value
RNA id AMCG00006765
length 3627
RNA type mRNA
GC content 0.39
exon number 14
gene id AMCG00006765
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19006380 ~ 19046061 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAGCTGTTCACAGAGGGCTGTCTGTGGTGCTGGTGCATCTCTGGGTCCTGTGGAGTTCAGCACTGGCAACCGGGAGCAACCATCCAAGACTGAGACTATCTCACAAAGAACTCTGGGACTTGAACAGAACCTGGGTGTTTCACGGACCACGGACCTTTTTGGACCTACAGACAATGTTACTTGATGAGAATCAGGAGCGGCTGTTTGTAGGAGGTCGCAACCTCATATATTCTCTCAACTTGGACCGAGTAAATGAGGAGTACAGAGAGaTCCACTGGCCTAGCACAGAAACACAAGTAGAAGAATGCCAAATGAAAGGCAATGACAAGTTTGAGTGTGGCAATTTTATCAAAATCCTTCAGCGGTACAACAGAACACATCTACTGGCATGTGGAACGGGGGCGTTCGATCCCATCTGTGGCTTCGTAAGGGTAGGACATCGGACAGAGAATGACCTTGGAGGTCAAAGGATGCTGGTAAATAAATGGACCTCTTTCATAAAAACACGGCTCGTCTGTTCTGTCCCTGGAAGCAACGGAATTGACACATGTTTTGATGAGCTTGAGGATGTGTTCCTACTCAAGAAGAAAGATGAAAAGAATCCAGAAATCTTTGCTTTATTCAGCACTACAAGCAATGTGTTTAAAGGGTATGCTGTGTGTGTCTACCATATGAGTGACATCCGAGCTGCATTCAATGGGCCGTTTGCACATAAAGAGAGACCAGAGTACCAGTGGACGGCCTTTGAGGGAAAGTGCGCCAGCAAGATGAATGGAGGTCAATACTCCAGCTCCAAGGAGTACCCAGACGATGTTCTTCATTTTGTACGAGGTCACCCTTTAATGTACCAGCCTGTCTATCCCGTTCACAAGAGACCAATTCTCCTCAAAACGGATGGAGAGCAAACCCTCAGACAAATAGCTGTGGACAGAGTGGAAGCTGAAGATGGACActataatgtgatttttattggAACAGaTAATGGTACTGTACTAAAAGTAATCACACTATACAATAAGGAAAGGGACAGTGTGGAGGAAGTCCTTCTGGAAGAGTTACATGTCTTCaaggttccAGAACCAATCATAGAAATGGAAATCTCGACTAAAAGGCAACAGCTTTACATTGGCTCCAAGTCAGCGGTGGCTCAATTGAAGGTGCATCAGTGTGATTTGTATGGATCAGCTTGTGCCGACTGCTGCCTGGCTAGAGACCCGTACTGCTCCTGGGACGGAGTGTCATGTTCCAGGTATTATCCCTCCGGATTGCTCACAAAAAGTGGGCAGAACAGAAATGAAGATGAGTCTCAGAAGGCTGCTGTGGCCATGGTTTATGGAGTTGAGCACAACAGTACCCTACTTGAATGCACTCCAAGATCTCTCAAGGCAAAAGTTCTCTGGTTCTTGCAAGGGAGTCCTGACATAAGAAAGGATGAAGTAAAAACAGATGAAAGGATAGTGAAAACGGAACACGGTCTCTTGTTTCTGAAATTGCGAAAAACGGATGAAGGCACCTACCTCTGTCAGACTGTGGAGAATGGCTTCAGCAACACAGTGGTGAAAATTACTCTGGAGGTCCTGGAAGAGGACCGGATCGAGGAAATGTTTAACAGAGAGGAGGAAGATGAGACTCATCAAAAAACGCCATGCCCAGCACCCCCTGGCATTCCTCAAAGCTCTTCCAGGACTTGGTACAAAGAGTTCCTTCAGTTGATAGGATACAGTAACTTTCATAAAGTAGAGGAGTACTGCGAGAAGGTGTGGTGCACCGACAAGAAGCGCAAGAAGCTGAAGGCAATGCAGCCAAAATGGAAATATTCCAATTTGCCGGAGAAGCGAGGGAAGATAAGAGCAGAACACCATCGGATGCCTAGACATGCCTTGGATACCTGAAGACGGAGGGCAAATTTCCCTCATGAACAATgcttttgaataattaaaaacgaaacaaaaactGTTTACTGATGGACAATTATTTTACTCAAGAAACGTTCAAAAGCacattgtaaattataattatatgtcTAACAGAAGAATTTAGTATTACTTTAGTTACTGTATaccaatatttaattgaattagacTGGAAATATTAAGgtactatttaaatgttattaacttAATActgtcaaaatattatttaaaaaaaatgtaaaatgtcattCATCCTCAATCAAAATTGAAGCTGTATAAGAGGCACTCTGGCCATTCAACATAATTTTAAAGCCAGTCCTTCAAAAACATGGTATGAATGAACACGTTCGTGATATAGATGAATGTGGACTCAATATGTCATGTTAACTATTTGTGTAAGTGAAACACAAATTGAAAAGTCtcacaataatataaaagtagatcataaaatataatcttccAGTCACTAATGTCAATGACAATATGTGGACTTTTAAACCGTGCTGTTAACCACAGTTTGACTTTTTCCATGAATGATATTACTGTAGTGGAATGAAAGTTAATACAACAGTGTTTCAGAGGCACACACAATAATTCAGTTCATGCTTAAAtcatgtgaaaaaaaatgtcaccAAGTGCTGCATAGTAGACATGGAGCAGACACATACATACCTTGTgtgttatttcacaaaaaatgtTGGGTAACAAACTCTAATCTCAGTGGTATTTcaagaaaatgtcaaaacaacCTGCCCTCAAATTGTACATTGTAATTTACCATTTGCAGGTCATTTTAAGTTATTCCCTTTACTATGCACTGTTACAGACCCTGCTCTAGATACTGCAATCTCATGTGAGGGGAAGTTCAACATGTCGGAGTATCAGACAATATATAAACCCAACTATAtagtactgtgctgtattgaaATAGTAATTGTAGAAGAAGTGAATACACAGCTTTCTGGATAAAAATGACACCTCATAATGTACAGTCCTATCAGTTTCAGGAGATATTGAAATTAATCCATCCAGAAGGCATTTGGATGAGACTATGCACTCCCTTTTTATTTGCTCATTacactgttttaatttatatgaacAATGCATCTGAGATCCTTGGCTCCACTTCACTCATAAAAAAGGtacttgttttcaaatgtttatgtaATGTAAGAAATGGAAAAGTGACTTGTGTTTATGTATAACTGCATGCTCTTAGAGGTGGAGAAAGTGTAGGTTGGCACATACTTTATCTTTCATGCTTATGACACGCATGTAAGAAACGTGCACACACACTCTTTGATCAGTTCAGTACTATGAGACACCTTGTAATAAGCTTGAATGATATACTGTAAACAAAAGTATTTACATTGTATAGCTGTGGTTATATAAATCCTTGTATCTACACAGTGGTGTTACTGAAGTAGTGTTTATCCTATAAGACGTAAAGTACCtcttgtacatgtttttttctgtctctcttttttcaGTTCCTGCATATAATGTTGTGAAATGCATGAAGGTCTTTAAGTGCTTAATGAGTTTTCTGTGAGAACAGGGTGTTTAGTAATAGACATTTGTTATCTGTGAGGCATTTTCAcacaaatagtaataaaataataataaatattaataataaacacaactctgtgtattggtcagaATTGACAGAAAGCAtgaataaatgattaaaaaataaataaataaaac

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140523 lncRNA downstream 120334 18883628 ~ 18886046 (-) False G112205
TU140524 lncRNA downstream 120334 18883628 ~ 18886046 (-) True G112205
TU140511 lncRNA downstream 261163 18695072 ~ 18745217 (-) False G112195
TU140510 lncRNA downstream 261917 18695072 ~ 18744463 (-) True G112195
TU140448 lncRNA downstream 597603 18399263 ~ 18408777 (-) True G112140
TU140596 lncRNA upstream 362758 19408819 ~ 19418420 (-) True G112270
TU140614 lncRNA upstream 468738 19514799 ~ 19515004 (-) True G112287
TU140615 lncRNA upstream 491144 19537205 ~ 19537793 (-) True G112288
TU140616 lncRNA upstream 495042 19541103 ~ 19541968 (-) True G112289
TU140617 lncRNA upstream 518895 19564956 ~ 19566015 (-) True G112290
AMCG00006764 mRNA downstream 3599 19000927 ~ 19002781 (-) True AMCG00006764
AMCG00006763 mRNA downstream 43820 18939150 ~ 18962560 (-) True AMCG00006763
AMCG00006762 mRNA downstream 85580 18915002 ~ 18920800 (-) True AMCG00006762
AMCG00006766 mRNA downstream 102833 18887605 ~ 18903547 (-) True AMCG00006766
AMCG00006761 mRNA downstream 293984 18696741 ~ 18712396 (-) True AMCG00006761
AMCG00006767 mRNA upstream 49475 19095536 ~ 19134727 (-) True AMCG00006767
AMCG00006768 mRNA upstream 261070 19307131 ~ 19336296 (-) True AMCG00006768
AMCG00006775 mRNA upstream 357220 19403281 ~ 19407976 (-) True AMCG00006775
AMCG00006776 mRNA upstream 523673 19569734 ~ 19593231 (-) True AMCG00006776
AMCG00006773 mRNA upstream 577094 19623155 ~ 19631831 (-) True AMCG00006773
TU140430 other downstream 665170 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 1372935 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 3253145 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 4252410 14725651 ~ 14753970 (-) False G111621
TU140642 other upstream 587176 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 1189795 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 1807996 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 4358114 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 7453954 26500015 ~ 26500681 (-) True G113530

Expression Profile