RNA id: AMCG00006766


Basic Information

Item Value
RNA id AMCG00006766
length 2065
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00006766
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 18887605 ~ 18903547 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGAACAGCAACGCCAAGATGTTTGCAAGCATTGCTGTTTTGCTACTGGCTGCTTCGGTCTGGTCTCAAGATATGTCTTATGCTGAATATCTTGAACAAATTCAGGCATGTCCAGAGGAATGCCGTTGTCCACCTAGCTTTCCCAATGCTGTTTATTGTGACAGCAAGGGGCTGAAGCAGATACCCAGCATCCCCCCCTACACCTGGTACTTGTATCTCCAAAACAACCTGATCGATGTTGTTTCAGAAAAGTCCTTTAAGAATGTCACGCAACTCAAGTGGATCAACTTGAACAAGAACAAGATCACCAATAACGggattgaaaaaaatgtatttcaggaaATGACAAGTctgctgtatttgtatataGAAGATAACCTGCTGGACGAAGTGCCCTCTCTTCTTCCAAAAAGACTGGAACAACTGCGACTATCAAGGAACAGAATCTCCAAAATCCCTCCTGGGGTCTTTGATGGCATGGAAAACCTTGCAATGTTAGACCTTCAAAACAATAAGCTGGAGGATTCAGCCATTACAGAAAATACCTTTAAGGGCACGAAGAATCTCGTCCAGATCAACCTGTCTAAAAACAATCTGAAGAAAATGCCTGCTGGATTGCCTTCAACTACCTTGCAGTTATTCCTTGATAGCAACTCAATTGAGAAAATCCCTGACAACTACTTCAAGGAAACACCAAAAGTTTCCTTCCTTAGGCTTAATTATAACAAGCTTGCTGATGGCAGCCTTCCAAAGAACATCTTCAACATCTCCACCATCCTCGACTTGCAGTTATCTCACAACCAGCTCACCCAAGTGCCTCAGTTCCATTGCAGCCTGGAACACCTCCATCTCgatcataacaaaataaaaagTGTTAATGGTAGTGACATATGCCCTCTGCCTGTCGGTATCGTTGATGACTACCATGATGAAAAGACGCCACGTCTACGTTACCTTCGTCTCGATGGCAATGAGATAAAGCCGCCCATTCCAATGGACCTCATGATGTGCTTCCGACTTCTACGGGCTGTTGTATCGTGCAATGAAAAGCGCAAGCGGAGGAGTTTAAATAGGGCTACGGACTTATTCCTTGCAGTTTACCCAGCAGGGGTTGGGATCATGAAGACCTTTGTGAATTTAGTACTGGGTCTATTTATTGTGAAGGCAATTGTTGCTGCTCCATCAAGGCAAGTGAGACAGACCCCAGGCAGATATGACGCGTCAAACTATGATGTAGATTTGGAAAAACTGAACTTTGAAGATCAAGACATCTATGAATATGAGGATGAACTTACAATTGATGAACCCCAAATTGAGATTGGCACCCTTACTCCCCCGGTGGGCGAACCCCTGCTTCCGGATGAGGAGGTCCCCCTCAAGCCCCACACCCCAGTCCAGAGCACCGGAGGCTCGGGGGTGCTAGGACCAGATGCACAGGGAGATTTGCCTACCTGCTTGCTGTGCACCTGCCTGGGAGGGTCCGTCTACTGTGATGATGTGAAGCTCGAGACAGTTCCCCCTCTTCCAAAAGAGACGACCCACTTCTATGCCCGCTACAACAAGATCAAGAAAATACACAAGTCTGATTTTGCAGAGATGAacAAACTGAAGAGGATCGATGTGACCAGCAATCAAATCACTGAGATCGATGAGGATGCCCTCAGGTCCCTGCCTCAGCTGGAGGAGTTGGTGGTGCGAGATAACAAGATCCGCCAGCTGCCCGAGCTGCCAAACACCATGACTCTGATCGACGATATGAATAACCTGCTGTACCTGTATGTCACTGACAACAGCCTGGACCACATTCCTCTGCCACTGCCTCATACCCTGCGCTCCCTTCACCTGCAGAACAACAACATTCAGATGATGCATGAGGACACGTTCTGCAATTTGAAAGATATCAACTACATTCGCAGATCCCTGGAGGATGTCAGACTGGATGCCAATCCCATTAACCTCAGTAGGACCCCACAGGCTTATATCTGCCTGCCTCGTGTGCCTACTGGACGGCTTTACTAAATctttggggtgtttttttttttttttttttttttttttttttat

Function

GO: NA

KEGG:

id description
K08123 KERA; keratocan

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140523 lncRNA downstream 1559 18883628 ~ 18886046 (-) False G112205
TU140524 lncRNA downstream 1559 18883628 ~ 18886046 (-) True G112205
TU140511 lncRNA downstream 142388 18695072 ~ 18745217 (-) False G112195
TU140510 lncRNA downstream 143142 18695072 ~ 18744463 (-) True G112195
TU140448 lncRNA downstream 478828 18399263 ~ 18408777 (-) True G112140
TU140596 lncRNA upstream 505272 19408819 ~ 19418420 (-) True G112270
TU140614 lncRNA upstream 611252 19514799 ~ 19515004 (-) True G112287
TU140615 lncRNA upstream 633658 19537205 ~ 19537793 (-) True G112288
TU140616 lncRNA upstream 637556 19541103 ~ 19541968 (-) True G112289
TU140617 lncRNA upstream 661409 19564956 ~ 19566015 (-) True G112290
AMCG00006761 mRNA downstream 175209 18696741 ~ 18712396 (-) True AMCG00006761
AMCG00006760 mRNA downstream 199369 18653504 ~ 18688236 (-) True AMCG00006760
AMCG00006758 mRNA downstream 240837 18642384 ~ 18646768 (-) True AMCG00006758
AMCG00006759 mRNA downstream 283943 18536049 ~ 18603662 (-) True AMCG00006759
AMCG00006755 mRNA downstream 401441 18415916 ~ 18486164 (-) True AMCG00006755
AMCG00006762 mRNA upstream 11455 18915002 ~ 18920800 (-) True AMCG00006762
AMCG00006763 mRNA upstream 35603 18939150 ~ 18962560 (-) True AMCG00006763
AMCG00006764 mRNA upstream 97380 19000927 ~ 19002781 (-) True AMCG00006764
AMCG00006765 mRNA upstream 102833 19006380 ~ 19046061 (-) True AMCG00006765
AMCG00006767 mRNA upstream 191989 19095536 ~ 19134727 (-) True AMCG00006767
TU140430 other downstream 546395 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 1254160 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 3134370 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 4133635 14725651 ~ 14753970 (-) False G111621
TU140642 other upstream 729690 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 1332309 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 1950510 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 4500628 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 7596468 26500015 ~ 26500681 (-) True G113530

Expression Profile