RNA id: AMCG00006767


Basic Information

Item Value
RNA id AMCG00006767
length 6583
RNA type mRNA
GC content 0.39
exon number 16
gene id AMCG00006767
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19095536 ~ 19134727 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAATGTTGGATTCTAACAATCTAATTACCTTTAATGGCCTGGCTAACAGCTCCAGTTATCACACTTTCCTGCTGGATGAGGAAAAGGGCAGGCTATTGGTGGGAGCCAAAGACCATATTTTCTCCTTTAATCTCGTCAACATAAACAAGGACTACCTAAAGATTGCTTGGCCTGCAACTCCTACAAGAAGGGATGAATGCAAATGGGCAGGAAAAGACATCTTGAAAGAATGTTCCAATTTCATTAAAGTGCTGCAAACCTTTAACCAAACACACCTGTACGCCTGTGGAACGGGGGCCTTCCATCCCATATGCGCCTACGTTGAAGTTGGAAGACGTCCAGAGGACAATATCTTCAGACTTGAAACATCCCACTTTGAGAATGGCCGAGGAAAAAGTCCCTATGACCCAAAGCTGCTGACTGCTTCTCTTTTAATTGatGGAGAATTGTATTCTGGGACTTCTGCGGATTTCATGGGCAGAGATTTTGCCATTTTCCGTACGTTGGGACAACATCATCCAATCAGGACAGAACAGCATGATTCAAGGTGGCTAAATGATCCCAGATTTGTGAGTGTCCATCTTATTCCAGAGAGTGATAATCCTGAAGATgataaaatgtacttatttttccGAGAAAATGCAATGGATGGAGAGCACACCGGGAAAGCAACCCATGCTAGGATTGGACAGCTCTGTAAGAATGACTTTGGAGGTCACAGAAGCCTGGTCAATAAATGGACCACCTTCCTAAAAGCAAGACTCATCTGTTCTgaTGTCTTTCTGATGACCTCAAAGGATCCCAAGAACCCTGTTATATATGCTGTATTTTCAACATCCAGcAACATCTTCAAGGGGTCAGCAGTATGCATGTACAGCATGACTGATGTGCGGAGAGTGTTTCTTGGACCGTATGCACACAGAGAGGGACCCAATTATCAGTGGGTACCATTCCAAGGAAGAGTGCCGTACCCACGTCCTGGAACTtgcCCAAGCAAAACGTTTGGTGGGTTTGATTCTACTAAAGATCTTCCTGATGATGTCATCACTTTTGCAAGAAGCCACCCTGCCATGTACAACCCTGTCCATCCAATTAATAACCGTCCAATTATCATCAAAACTGACGTTGACTACCAGTTCACACAGATAGTGGTGGACAGAGTGGATGCTGAGGATGGGCAGTACGATGTCATGTTCATTGGAACAGatgTTGGCACGGTTTTGAAAGTGGTATCGATTCCTAAGGAGACCTGGCACGACCTGGAGGAGGTGCTATTGGAGGAAATGACTGTGTTCAGAGAACCTACTGCTATCACAGCCATGGAGCTTTCAACCAAACAGcaacAGCTCTATCTGGGCTCGGCCATTGGAGTTTTGCAGATGCCGTTGCACCGCTGTGATGTGTATGGCAAGGCCTGCGCTGAGTGCTGCTTAGCGAGAGACCCCTACTGTGCGTGGGACGGCACTGAGTGTTCCCGATACTTCCCCACTGCAAAAAGGCGGACGAGACGACAGGACATCAGGAACGGGGACCCTCTGACCCAGTGCTCAGATTTGCAGCATCATGACGACTTAAACGGACAAGGGACTTTGGAAGATAAGATTATTTATGGCGTGGAAAATAGCAGCACTTTCCTGGAGTGCAGCCCCAAATCCCAGCGTGCCCGCATCTACTGGCAGTTTCAGAAACAGAACGAGGAGCGCAAACACGAGATCAAATCAGAGGAAAGATTCATACGCACAGAACAAGGCCTCCTCATCCGCAGCCTGCACAAGAAAGATTCAGGGATTTACTACTGCCATGCAGTCGAGCATGGATTCATGCAGACTTTGGTCAAGGTCACCCTCGAGGTTATTGACACCGAGCACCTGGACGAGCTTCTGCACAAGGATGAAGAAGGTGAAGGAGCGAAACCAAAGGAGGGCCACGGCATCGTCCCACCCAACCAAAAAGTCTGGTACAGAGACTTTATGTCCCTCATTAACCATCCTAACCTCAACACTATGGATGAATTTTGTGAGCAGGTGTGGAAAAGGGAACGCAAGCAGCGCAGACAGAAAGCTGCCAATGCCCAAACGCACGCCAACAAATGGAAACACCTTCAGGAAAACAAGAAGGGCAGAAACAGGCGGACCCATGAACTCGAGAGGGCACCGAGGAGTGTCTGATACAGCCGTGTCATTCGAGAGACTGAATCTGAGTAGACTTTAAAAGAAACTCAACTggaaacaaatgcaatacaCTCCTGGTCTAAGTCATTGCATTGGTGAAGATGTTTACAATGGTTTATTGGAAATGACTGACAACACCATCTTGTGTTCATACTTAACCCTTTTGACTGGTCTCCATAACGAAACGATGGAAACTAAAACTCGGACTGTAAATATTCAACAGCAAGAACTATATTTGACATTGCTTTGggtttttagtttagtttagattCATAGTTCAGTTGTTATAATTGATTGCCATTCGCAAGACAAGTGTAAAACTAAAAACCGATGACGTTTTTTAAACGGACGTCGTCGTAAACTATATATTGAACTGATAAAGAATGACCGTACGAGTGTAAGAGGATGTTCATTATACAGTAGAAGGGTGTTTTGGATCTaatgtacagtataatacacCTGTCTGGCGCATTTGAAATGTCGATACAATGCTCTTTATATGTACTCAAGGTAACTGTGCAATTCCAATTTTCAGTACATCAAATTTCAACTAGTTCTTAGACAGCTCAAGACTTAATTGGTTgagtataatttaaaattgaattagcAAATACCAATAGAACAATATCATTTCAATTtccatctttgttttttcattttttaaaaccgTTTGAGAGCactgcatatttaaattaactcaCTATCAAAGTTGACAATATATCTCCTTTTGCCAAgttgtttttcaaagcaataGTTCTATAATGAAGTCCTATATGATATGAGGTAATCTATTTTAATACATCATCTGAATAAGCTCTTCCAATCCTGACATATATTTAAACTTGCTGCaaaaggaatattttatttttcattcaacagAGATCTATCTAAAAGTCATCTAACAGTATATAGTTGTacttgtatttcaatgtatatcTTCCTGCTTTACTACAAATACTACTGCATCCCAAAGGGGTAAAAAACTTTTACATTCTcaaacatttcttgtttttctttttatgtttctcttatttgaagatgcttttctaaattattttggACACTTTTTTCTGAGCTTTATGCACTGTAAACTGACAGATCTACAGTATAATAATGTGGGTATATATTATCCCAAATACATGCTCATCAatcatctgtttaaaaaaagaaacattctgtaatttattaatctGTACCTGGACTACAGTAAAAGGTTTTTTCTAATTATTGTAGCATTGACAAACAAGCTACAACgtcaaaatcaatcaaatgcCTATCAGGGAGAAGGACCAACTAATAatattaccttttttttaattcatgttatttttatcaaggcaaaaatagaaataaacactgaaactatttaatttaagttCTTATTTTTACAACgggatatgttttatttaacttatgtCAGACACGAGTGTAGGCCGgcaatgcttttgttttctgttttaaaaggtttttgaaTCAGCTGACTTAACAAGACTTTGCATTTCTATTCCTGTGCATACATCTGTGTTACtcgaaaaaacaaaacttggtCTCCATTGACTGAATTAAGATGAGAATCTGCAAAGGGTCTGCATTACGGACATTTGGGAATTTGAATTATTCTTTACACGGCTGATTAGGTAATTACAATTTGTATCCCAAATGTACAGAGAAATAACCGTtattaagggggaaaaaatgggCCATATATTCAAAAGAGCTGCATGTTTGCAAAAGGGGAGTTACagagtttattttatagatttttgtatttctttttccttGGAAATCTCAAGTTTGTGTCGTTGGGAGAACACCAAAATGGAAACTGTGTAGGAAAGAAGAGGTCTTGCACACTGTTCATCACAGCTGTCTCTTTTCAAATTTGGAGACGGGTTATTAAAAAGTATTCAAGTTCAACCGCAGAGTAagaaactttttatttttatgttttgattgtgTCGCATTACACGACAGTGGTACCACTGAATTTGTTTAACTTGTTTAAATGAGTCACATGACTTTCTACAGTTTGTATCATAAAAGTCCAGGGGAAAGATGCACATAAGGAGTTGTTGtacattatgtaaattaatacatatatgtagaCTATAAATGTTTAGGTCACCCTGGATGatactttcctttattttcctttattataatgattattattatttcattgtttacAAAAATTGTCCATCTGTATTTTTATCCAAATAAGAGACAGTGACCTTTAGAGCATCACACCATTAAACCAGATGTGTTATGACAAATATAATTAGTTGGTGAATAAACTGCAGTTGTTCACTGTAGCCcctattttattatgtatgttttttacatttggatTTATTCGTCCTCGCAAAATAATGTGCTGACACTTCTTCCAAATAGATTGCTTTTTTATCTGGAAAGCAAACTATTACTCCCATACATTCTCCAACTCGAGCAAGTATTTCTAGAGTTGCTTATAATGCCTGTTTAAGCTAGATCGTGAGTTTAAACCCGCAGTGTTTTGACAGACATTCCTCCTTTGAATTTTGCTGACTAACGATTTTAAGCAAGATGCTAACAAAGCACTAAGGGCTGCAAGAAACGTTTCTCAGATCCACAAAACCTTTGAATATATGACCCAAGTTATTTGATAAGTGGATGTATGTATCGGTGATTGAACACAACTCCTTATTTGGGAGAAAATAAACTCTAATGATGTCCCAGAGCTACAGCAACAAATGTAACCAGTCTTTAAGATGATGGCATGACTCCTCCAGCCAGACAGACTAATCTTGTTGAGCATGTGTTGGTTAAATATTCCCAACCTTAGAGCCACAATCATGAGCCAAGATCGCATTGTTCGTTTAGTGAACAACGGCAAAAGAAAGTGAACCAATATTGTCACAAAACCATAGATCAACATCAGTAACAACTAATGCATCTGGGGACATTGTCAGGCCTAAAAGGAGTTCAAGCTGTATCTCATTtgcaaacacagacaccagGCTCGGCCGTCCATCATTAACCAATGTTGCCGCCGGTGCTGATTGTCAATTACAATTAACAATCTATCAAAGTGACTGACATCCTGACAGCCTTGGCCCAATAATTACTGGTTAtctgggatttttttgtttctttgttatttcATAAAGTATGTATTGGATGTAGTACACGTTTCTACAATAAGCTCCCttgtttaagtatttattttatttttaatgaaaatgtgataCAGGAAGTGCTTCTGAAATAAAGCTCCGTTTAGACGTTATACCTTTGTTTCAAACACAATGTGATAGCATGGCGAACAGTGCCTGGCTATAGCTCGACTATGAATCATGCGGTTGTTTTTGAGGCCTTTCCTATTAAACCTGGTCAAATCTCACAATACTTCCAACTGTTGTAGCTCGTCTGCAGGCAGCCTGGACGTGGGGCTGGAAACTGTGAAACCAATTGTGTGGATCAGCACATAGAGGGCGTCAGGAGGATAGATACGTTTTTAAACACCAGCCACCTGAGCTGCCATTTCCCCCTGCCATTGCTGAACCTTAacagcaaaagaaaaggaattaaTGGTGGCCTATGtgcataataattattaaaagacTCGTAACGCAGTGTCTATATACACCTAGACCCCATTCATTCCCCCTCAGTAGCTTTCTTGTTCGTTTTGTTCCCAGGTCGCCCAAAGTTTACTTCTTAAAATGACAGGAGCGTAAAGATCGGAGAGTTTACACATTCTCTGTCTCGATACTTTTGTTGGATACATTTCATTATGCAAAATTAAGTATTTGCAAGATGGCTCTGTTTGCAAGATAATATATACCCTGAAAAGTAGCTgtgaatttaatgtaaaaaataaaatcatgtcatggtccaaacaaataaaaataaaagacactgTGTACAAATTGCATGTGAATGctattttaatgcatcaatttttatatatataatttagtattgACTAATGTTGTGTGTAATAGATCTGCCTTTTGCTTTATGCAGTACACATAAACCTGTTTTAaaggtgtatatatttttccttagGTAAATCAAAGGTACAGTGTAAAGTACTGGCATCCATAGGTACTCGATTCCAATGTGTTGTATATCACTTTTCATCTACTAATATACAACCATGTTCCCCACttggaaaaaagttatttaatatttcagtgcaaCACAGAACAGTATCCAGCAGATAGCATGGGTGTTTTATTAAGAGCAATGCATTTACATGACTGCTTTGCTCATTGCATTTCAGACGGTCTCTATGGAACTGGATGGAAATATAAGAGAAACTGCTGCTgtaaattattctttttttggCATGTATTcagttgttaaaataaacatttcttctTAAACATGAGGTTCTTGCTGTCTTTAATAATTGGAACGTGCATGCA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06840 SEMA3; semaphorin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140523 lncRNA downstream 209490 18883628 ~ 18886046 (-) False G112205
TU140524 lncRNA downstream 209490 18883628 ~ 18886046 (-) True G112205
TU140511 lncRNA downstream 350319 18695072 ~ 18745217 (-) False G112195
TU140510 lncRNA downstream 351073 18695072 ~ 18744463 (-) True G112195
TU140448 lncRNA downstream 686759 18399263 ~ 18408777 (-) True G112140
TU140596 lncRNA upstream 274092 19408819 ~ 19418420 (-) True G112270
TU140614 lncRNA upstream 380072 19514799 ~ 19515004 (-) True G112287
TU140615 lncRNA upstream 402478 19537205 ~ 19537793 (-) True G112288
TU140616 lncRNA upstream 406376 19541103 ~ 19541968 (-) True G112289
TU140617 lncRNA upstream 430229 19564956 ~ 19566015 (-) True G112290
AMCG00006765 mRNA downstream 49475 19006380 ~ 19046061 (-) True AMCG00006765
AMCG00006764 mRNA downstream 92755 19000927 ~ 19002781 (-) True AMCG00006764
AMCG00006763 mRNA downstream 132976 18939150 ~ 18962560 (-) True AMCG00006763
AMCG00006762 mRNA downstream 174736 18915002 ~ 18920800 (-) True AMCG00006762
AMCG00006766 mRNA downstream 191989 18887605 ~ 18903547 (-) True AMCG00006766
AMCG00006768 mRNA upstream 172404 19307131 ~ 19336296 (-) True AMCG00006768
AMCG00006775 mRNA upstream 268554 19403281 ~ 19407976 (-) True AMCG00006775
AMCG00006776 mRNA upstream 435007 19569734 ~ 19593231 (-) True AMCG00006776
AMCG00006773 mRNA upstream 488428 19623155 ~ 19631831 (-) True AMCG00006773
AMCG00006774 mRNA upstream 498366 19633093 ~ 19635653 (-) True AMCG00006774
TU140430 other downstream 754326 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 1462091 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 3342301 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 4341566 14725651 ~ 14753970 (-) False G111621
TU140642 other upstream 498510 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 1101129 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 1719330 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 4269448 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 7365288 26500015 ~ 26500681 (-) True G113530

Expression Profile