RNA id: AMCG00006769


Basic Information

Item Value
RNA id AMCG00006769
length 1317
RNA type mRNA
GC content 0.46
exon number 2
gene id AMCG00006769
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19537333 ~ 19541966 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGGCCCAGTTCCAAGCACTTTTCTTGATTTTATTCTCAAGAGGAATCCAACTCGCATTCAGTGATACCAGCTTCATTAGGAAAGAGATCAAGATCGATGGAGATCTCGTGTTAGGAGGTCTTTTTCCCATCCACGAAAAGGGCGTGGGAATGGATGAATGTGGGAGAATAAACGAAGAAAGGGGGATACAGCGCTTGGAGGCTATGTTGTTTGCAATCGATTCGATCAACAGAGATCAGTCTTTGCTACCTGGGGTCTCTCTTGGTGTGCACATCCTGGATACATGTTCAAGAGATACGTATGCTTTGGAGCAGTCCTTGGAATTTGTCAGAGCATCCCTGACCAAAGTAGATGAAACAGAATTTATATGCCCTGATGGCTCCTATGCTATCCAAGATAATAGCCCCTTAGTGATAGCTGGTGTGATTGGAGGATCCTACAGTAGCGTCTCTATACAGGTTGCAAATTTACTGCGATTGTTCCAAATTCCTCAAATCAGCTATGCCTCTACAAGTGCCAAACTGAGTGATAAATCCCGATATGACTATTTTGCCAGGACAGTTCCACCTGACTTTTACCAGGCCAAGGCAATGGCGGAGATCTTGAGATTCTTCAACTGGACCTATGTCTCCACCGTGGCCTCTGAAGGCGACTACGGGGAGACGGGGATTGAAGCTTTCGAACAAGAAGCCCGGCTTCGTAACATATGTATTGCCACCTCTGAGAAGGTGGGTCGATCCAACGTCAAGAAGTCATACGATGCTGTAATCCGTCAGCTGCTCCAAAAGCCCAATGCAAAAGTAGTTGTGCTCTTCATGCGCAGTGACGACACAAGGGAGCTACTGGCTGCTGCCAATAGACTCAACACATCTTTCACATGGATTGCCAGCGATGGTTGGGGGGCTCAAGAAAGTGTGGTCAAGGGAAACGAGAATGTAGCCAATGGAGCAATTACTTTAGAGCTCGCTGCCCATCCGGTCAAGGAGTTTATCAGATACTTCCAATATCTTAACCCTTTAAACAACAAACGAAACCCATGGTTCATTGATTTCTGGGAACAGAAGTTTCAGTGTGTCTTACAGAATGGAAACGCTCAACAGAAAGCCTGTGACAAACACCTGGCCATCGACAGCTCAAATTTCGAACCAGAATCCAAAATTATGTTTGTGGTGAATGCCGTTTATGCCATGGCTCACGCCTTACACATAATGCAACGCACCTTGTGCTCCAACACAACCCTGCTTTGTGACAGCATGAAGCCGCTGGATGGAAGGAAACTATACCGTGACTACTTGCTGAACATCAGTTTCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140602 lncRNA upstream 41568 19495534 ~ 19495765 (+) True G112275
TU140584 lncRNA upstream 141136 19395917 ~ 19396197 (+) True G112259
TU140557 lncRNA upstream 436935 19095628 ~ 19100398 (+) True G112233
TU140528 lncRNA upstream 633790 18900939 ~ 18903543 (+) True G112207
TU140495 lncRNA upstream 792116 18695159 ~ 18745217 (+) True G112182
TU140622 lncRNA downstream 84847 19626813 ~ 19628164 (+) True G112295
TU140636 lncRNA downstream 91273 19633239 ~ 19635224 (+) True G112302
TU140640 lncRNA downstream 101685 19643651 ~ 19645956 (+) True G112305
TU140697 lncRNA downstream 398527 19940493 ~ 19940975 (+) True G112350
TU140733 lncRNA downstream 441039 19983005 ~ 19983296 (+) True G112380
AMCG00006752 mRNA upstream 1137142 18368664 ~ 18400191 (+) True AMCG00006752
AMCG00006753 mRNA upstream 1197876 18317693 ~ 18339457 (+) True AMCG00006753
AMCG00006750 mRNA upstream 1572562 17963401 ~ 17964771 (+) True AMCG00006750
AMCG00006751 mRNA upstream 1595109 17938902 ~ 17942224 (+) True AMCG00006751
AMCG00006748 mRNA upstream 1672675 17860132 ~ 17864658 (+) True AMCG00006748
AMCG00006772 mRNA downstream 13437 19555403 ~ 19568758 (+) True AMCG00006772
AMCG00006770 mRNA downstream 69353 19611319 ~ 19621286 (+) True AMCG00006770
AMCG00006771 mRNA downstream 94151 19636117 ~ 19642171 (+) True AMCG00006771
AMCG00006779 mRNA downstream 105164 19647130 ~ 19650694 (+) True AMCG00006779
AMCG00006778 mRNA downstream 155465 19697431 ~ 19706930 (+) True AMCG00006778
TU139270 other upstream 6493885 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 9969982 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 10813267 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 11360547 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 11882139 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 1395531 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 1506370 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 1600899 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 4490147 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 4762813 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile