RNA id: AMCG00006771


Basic Information

Item Value
RNA id AMCG00006771
length 2542
RNA type mRNA
GC content 0.48
exon number 14
gene id AMCG00006771
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19636117 ~ 19642171 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGAATACCCCAGCATTTCTCTAGACCGCTTCGACAGAGACAATCTGAGCGCCAAGGCATATTTTCTGTCTCACTGTCACAAAGGTAGATCATATGAAAGGATTGAAAGGACCGGCGCTAAAAAGAAGGTTAAAATGCAGCCTTACTCTCCGGCTGTACTGCTCCCCAGTGACCAAGGAGCTGTTACTGAGCAACCCCCGgTTGGTTTAGAAGTGGAAAGCCCAACTCAAATTTCTCTGATTGATGAAGCATCTGGAGAGAAGGAAGATATTCTAGTGACACTTCTCCCTGCTGGTCACTGTCCTGGGTCAGTCATGTTCTTGTTCGAAGGCAATAATGGGACAGTTCTGTACACAGGAGACTTCAGAATGGCTGAAGGAGAGGCTGCTCGAATGGAGTTTCTGCACTCGGGGGACAGGGTGAAAGACATTCAGAGTGTTTACCTGGACACAACATTCTTTGACCCCAGGTTCTACCAGATACCAAGCAGGGAGGAATGTTTAAATGGAATAAAGGACCTGGTGAGAAACTGGATTACTCTCAGTCCATACCATGTTGTGTGGTTGAACTGCAAAGCTGCCTATGGCTACGAGTACCTCTTCACCAACCTCAGTGAGGAGTTTGGATCACAGGTCCATGTAAAGTACCTGGACATGTTCAAAAAGATGCCCGAAATACTGTGCCATGTCACCACGGACAGGGCAACGCAGATCCATGCGTGCAGACATCCAAGGGATGATGAATTCTTCAGAGCAAACCGGCTGCCGTGTGGAATCGTGGCTAAAGACGGAACCCCACTGCGCATAATCAGCATTAAACCGTCCACCATGTGGTTCGGGGAAAGATcgaggaaaacaaatgtcattgtGAGGACTGGGTCGAGTTCTTACAGAGCCTGTTTCTCATTTCATTCATCCTATAAAGAGatcAAAGATTTTCTTACCCATATTCACCCTGTGAATTTGTATCCCAATGTTATCCCAATGGGCAGAACCATAGAGGAGGTCAAAGAAATATTAAAACCCATGTGTAGAGAAAATTCTGGAAGAGGGGAGATTGTTTACAAACCGCTGGGGGCCCTCAAAAGGGCAAAACTGCATTTCACATCcaaagATTCTGACAGTGAGGAGGAGCTCTTTGATGAGGAAGAGGTGACGCCCTGGAGAAGAAAGTTGCCGGGGAAACAGGAGCAGAAACCTATGGCCTCAAAGTCTGAGAAGCCGCGGGAGATCCAGACAGGACCTCTCGTAAGCTGCTGCAATGAGGCTTCTCATGACGGGACAGGAAGGAAGTCCTCTACACAGGACTACATGGACTGCGAAGAGTCCAATGACGATGATGAAGATGAGGTCGAAGAAGAGCAGGAAGAAAGCTCTGGAAACACTACAAACAATCCATCTTCTGGTGACCAGAGCAGAAATGGTTGTACCAAGACCTGTGCGGCAACAGCTTGCCTAGAAGAAGAAAGACTTGAAGATCAACAAACGGAAACCCCAGTTGTGGAGTTAAATGGCTCTAAACTTCCAAAGTGGGATGAGTTTTTCGAACCGGAACCAGTCCTCACAGACGAGGGTTCGGAACTCGAGAACAGTCAGACCCGTTCTGCGGAAGTCACAGGACCCCGGTCGCCGGACCTGTTCAGCGATGACGAGGACTCCACTCACGTCTCCTCTCAGAGTTCCTCCCAGTCAACGCACATCTCCGAGCAGGGCAGCGAGGGCTGGGGCAGCCAGACGGACACCGTGCTGCTCTCGTCCCAAGAGAGAAGGGCAGAGCTTCTCAAGTGTTCACACAAAGGTGAGCACAAATCTAGCCAATCGGAAAACAACGCAGATGCAAGGAGAGGAGGGTGCAGTTTTCTCCGGCCAAACGAGGTCTTGCATGAGCCTGAAGTCCACGTGGAAAGCAGTGAGCGGAGGCCTGTACATTTGCCATCAGAGGTCAAATCAGAATCTCAAACTTCCTCCGATTTTGAAATCCCCTCGACGCCCGACTCCGAAGTGCCTCGCGTAGAGGAGCTGAAGGATCTGTACAAGAAGCTGGCTGCCGGGGAGGCCGTTGTCGTGAAGAGAGGCAGTCAGGGAAGCACACCAACTTCATGAccagattttaaatgaaaccCCAGGAGAGGATGGACTACTTTGTATATCATGTGGAACTCAGGGTGGTCCTAGAAATAAGAACAATTACACTATTTGTGATGTTCAATGCCACATTTAATGGCAACTTGAATATTTGTATCATTCCTTTTCAAGCACTTCTCAATGCAACGGTTGTATCTGACTTCTCAGGACCCAGCTAATGATGCCGATGCCTTTGCCTTTTTGGCCTCCCGTTTCCGAAGTTGTGGGTGAGAATGGGTTGTTACAACTGGTTCTAtaccttaatttattttatcactCATTGTTTTATTGCTGCTTAATGAATACTTAATTCCTCTTTTAGATTGTAAGGTTGCTACAAAAGACAGTATATTTTTATGGGTGGACCAAGGCAATACTGAACATTAACAGGATATTTAATGACTGGAGTCACTTT

Function

GO:

id name namespace
GO:0009987 cellular process biological_process
GO:0004518 nuclease activity molecular_function

KEGG:

id description
K10887 DCLRE1C, ARTEMIS, SCIDA; DNA cross-link repair 1C protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140636 lncRNA upstream 893 19633239 ~ 19635224 (+) True G112302
TU140622 lncRNA upstream 7953 19626813 ~ 19628164 (+) True G112295
TU140602 lncRNA upstream 140352 19495534 ~ 19495765 (+) True G112275
TU140584 lncRNA upstream 239920 19395917 ~ 19396197 (+) True G112259
TU140557 lncRNA upstream 535719 19095628 ~ 19100398 (+) True G112233
TU140640 lncRNA downstream 1480 19643651 ~ 19645956 (+) True G112305
TU140697 lncRNA downstream 298322 19940493 ~ 19940975 (+) True G112350
TU140733 lncRNA downstream 340834 19983005 ~ 19983296 (+) True G112380
TU140780 lncRNA downstream 633822 20275993 ~ 20276232 (+) True G112424
TU140786 lncRNA downstream 895772 20537943 ~ 20538220 (+) True G112430
AMCG00006770 mRNA upstream 14831 19611319 ~ 19621286 (+) True AMCG00006770
AMCG00006772 mRNA upstream 67359 19555403 ~ 19568758 (+) True AMCG00006772
AMCG00006769 mRNA upstream 94151 19537333 ~ 19541966 (+) True AMCG00006769
AMCG00006752 mRNA upstream 1235926 18368664 ~ 18400191 (+) True AMCG00006752
AMCG00006753 mRNA upstream 1296660 18317693 ~ 18339457 (+) True AMCG00006753
AMCG00006779 mRNA downstream 4959 19647130 ~ 19650694 (+) True AMCG00006779
AMCG00006778 mRNA downstream 55260 19697431 ~ 19706930 (+) True AMCG00006778
AMCG00006783 mRNA downstream 229835 19872006 ~ 19874589 (+) True AMCG00006783
AMCG00006781 mRNA downstream 242551 19884722 ~ 19933196 (+) True AMCG00006781
AMCG00006784 mRNA downstream 306970 19949141 ~ 19955839 (+) True AMCG00006784
TU139270 other upstream 6592669 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 10068766 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 10912051 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 11459331 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 11980923 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 1295326 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 1406165 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 1500694 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 4389942 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 4662608 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile