RNA id: AMCG00006773


Basic Information

Item Value
RNA id AMCG00006773
length 2062
RNA type mRNA
GC content 0.35
exon number 7
gene id AMCG00006773
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19623155 ~ 19631895 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agctgtggggaagaaacaataaaactgctttgtttcttttcctgccAGtgaatGAAAGCAGGTGGCACGATGGCGTAAGTAATGTGAACGCAGACGCCTCTGGGTGACGGTATTATTACAGCTTCGCTTCATGTGTGTCAGGAGTTTTTAGCGGCTCAAATCTTTGGAGTAATGTGTCGTACTTCAGGATTTAAAACAAGGCCTTGGAAGTAACACACCATGTACCCTACAGAAACCCCAGCTTCTGCGCTCCCAATCAGACTGAATTAATAAACAAGAAAATCCTTCCATGGGAATGATGTGCAGAAAGTAGTGGACTCACTCTCCTCTCTTGGGAAATGCTGTTTACctgaacaaatgttttcaatgaaaatgtactgCGTGCATCTACACGTAGGAGCGTGTTTACTGAGAGATTGAAAGGCTTATTGTACAGGACTTGAACCACTATAAGCCGACAATGGATGATTTTACAACCAGAACGTATGGGACCAGTGCACTGGATAACAGACCCTTATTCGGAGAGACCTCTGCCAGGGATCGAATCATCAACTTAATAGTTGGTGGCCTCACATCCTTACTAGTTATAGTAACAATTATTAGTTCTTTTGTCTTCCCTAATGTACCTCCGAAACCTGTGAATGTCTTCTTGGCCATTTGCATCGTTATGATTTGCGCCTCCGTAATAATACTTATTTTCTGGTATCGTCAAGGAGACCTGGAACCTAAGTTCAGAAACctgatttactttattttattttcaattgtcaTGCTGTGTATATGTGCCAATTTATACTTCCATGATGTGggaaaatgaataacaatatGCCTTACAGAAATTGTACTGACAAAAAAGGAGCAGTTCTACATGAATACTTTGTACCTTATACAAGCACAAAGAATGTAATAGTCAATGTACATGAAGCggtaatataattgtataatttaataaaaaatgattatatttaaaGATCTTTAATTATGGTGGCCAAAGAGTGTCACTATGTGTTACACACATGTATAGAAAGCAGCTTATTGTCATATTTATGAGGCATATAGCAAAACCATAGCCTGTCGTGGATAAGATGAAGCAAGCATGTGATCTTGTGTAGGAGACTgtaaggatttttttaaattggtacatttgaaatgtctgtCAGAAATTTGCATTATGCAATCGCAATCCAACACTTAAGTTACTTTAGCTTTTGGTCAGATTATAAACCTTTGGTCTATAATTGCATTGCTGTATTACTACAGGAAACAACTGACCAGTGGGGTTTTCTTGGTATCATTTGAACTTTTGATATGCCAACAAAAACTGTAGGAGACCCTCGAGCTCTGGGAAAAGCCATTGCTACTGAAGCATcaactttttatatttgtatattaaagaGCTAAGTGTGCATTCCAAACTTGCCAATAATTTTACTAtggcatttttttcatttttggaaaGGTTTATATTCCTTTTAATAAAGCACTTATTGTGATGActtgatacaaaaaaaagaccaattacatttgttttgttttagttaagaGGCTAAATGATTGCTctcaatataaaaaacaacaacatggtaTTCACTATCAAAATGCCAATAAAACTGTGACAGAAATCATCTGTTTTAATTCCaattttaaggaaataaaaaaaaaaaatcaatacttcTACTGCTTtgatttgtctgtgtgtggtgaGTGTCAAACTTATGAATTACAGTAAACACTAATTCAATCAGTGCTTTAGGCTTACAGTGGTTTCTGGGGAAATCTGTTctgctaaaatatttttttaatcttatttaaatatttttttgaagacTAAACCAAGTCTGATGTCAAATGACCTTTACAGACTTACCACAAGTGTATCTCGGATGCATAATACACTGAGGTAAATACCATTCTTTGTCAAAGCCACAATATTTCGAAGGTACATAGATACAGCATGAAAAGCatgtactaaatataaaatactgtactaTTGTGGGACATTAAATAACCCCCTGTGGAAGTAATGagtgttaatgttttattaaaaaaagaatgaaaacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140619 lncRNA downstream 53483 19568517 ~ 19569672 (-) True G112292
TU140617 lncRNA downstream 57140 19564956 ~ 19566015 (-) True G112290
TU140616 lncRNA downstream 81187 19541103 ~ 19541968 (-) True G112289
TU140615 lncRNA downstream 85362 19537205 ~ 19537793 (-) True G112288
TU140614 lncRNA downstream 108151 19514799 ~ 19515004 (-) True G112287
TU140765 lncRNA upstream 447060 20078891 ~ 20079411 (-) True G112410
TU140855 lncRNA upstream 1015489 20647320 ~ 20649616 (-) False AMCG00006807
TU140857 lncRNA upstream 1019210 20651041 ~ 20652840 (-) True AMCG00006807
TU140858 lncRNA upstream 1019210 20651041 ~ 20653659 (-) False AMCG00006807
TU140871 lncRNA upstream 1082252 20714083 ~ 20756786 (-) True G112496
AMCG00006776 mRNA downstream 29924 19569734 ~ 19593231 (-) True AMCG00006776
AMCG00006775 mRNA downstream 215179 19403281 ~ 19407976 (-) True AMCG00006775
AMCG00006768 mRNA downstream 286859 19307131 ~ 19336296 (-) True AMCG00006768
AMCG00006767 mRNA downstream 488428 19095536 ~ 19134727 (-) True AMCG00006767
AMCG00006765 mRNA downstream 577094 19006380 ~ 19046061 (-) True AMCG00006765
AMCG00006774 mRNA upstream 1262 19633093 ~ 19635653 (-) True AMCG00006774
AMCG00006777 mRNA upstream 11787 19643618 ~ 19646890 (-) True AMCG00006777
AMCG00006780 mRNA upstream 47770 19679601 ~ 19781353 (-) True AMCG00006780
AMCG00006785 mRNA upstream 309226 19941057 ~ 19947697 (-) True AMCG00006785
AMCG00006790 mRNA upstream 339796 19971627 ~ 19981435 (-) True AMCG00006790
TU140430 other downstream 1281945 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 1989710 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 3869920 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 4869185 14725651 ~ 14753970 (-) False G111621
TU140642 other upstream 1406 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 604025 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 1222226 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 3772344 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 6868184 26500015 ~ 26500681 (-) True G113530

Expression Profile