RNA id: AMCG00006774


Basic Information

Item Value
RNA id AMCG00006774
length 808
RNA type mRNA
GC content 0.42
exon number 3
gene id AMCG00006774
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19633093 ~ 19635925 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCTTGAAATAACCAGCCGCAAACATCAGCTCCTTATAAACGCATCAGTTATACAGAGATGCGGGCCTGCACTGGAGATCAAGAAGAGACGGAGAAACACATGCATGGCTCTGTATACAGAAGTACTAAGGCAAAGCACATGCACTGAAATTGGGGTGTATCTGTCACTGATGCTGCCGCACTCCCTGGCACAGCTTGTGTACCCGGTGGCACCATGACGTGCGCGGCCCATGTGGATGCCAACGCGCAGCCCAGGTCCATGAGCCGCGCCAGCCAGTGGAGCGGCGAGGTGGAGGACCTGTACCGCTTCCAGCAGGCCGGGTACAGAGACGAGCTGGAGTACAAGCAAATCAAGCAAGTGGATCTGATTGACCGATGGCCTGAAACTGGGTTTGTGAAGAAACTGCAACGACGAGACAACACTTTCTATTACTACAACAGAAAACGAGAATGTGAAGACAAGGAAGTTCGTAAAGTTAAAGTATATGCTTACTAACTTGTGTATTCTACACCCTATCTGTCTTCTCATGGAGTCATTCCttgtaaggaaaaaaaaacaacaatgtgaaTCTTATCTAAACATAAAAGTAGGAAGTATAGCTGTACTGCAGTACCttgaaatgaaacagaaacatgaaTCAGTACCAAAACTAAGTAAAAcatgatgttaaaataaatgtatttaataaacgTTATGAGACTAAAGTGTGTTTTATCATATTATTTGTTGAATATGTCAGTGTAAGGTTAACTTATAGAAGCTacaatttaataaattcattcaatttaattaGATGACAACATGGG

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007283 spermatogenesis biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140629 lncRNA downstream 1198 19623221 ~ 19631895 (-) False AMCG00006773
TU140630 lncRNA downstream 1198 19623221 ~ 19631895 (-) False AMCG00006773
TU140619 lncRNA downstream 63421 19568517 ~ 19569672 (-) True G112292
TU140617 lncRNA downstream 67078 19564956 ~ 19566015 (-) True G112290
TU140616 lncRNA downstream 91125 19541103 ~ 19541968 (-) True G112289
TU140765 lncRNA upstream 443238 20078891 ~ 20079411 (-) True G112410
TU140855 lncRNA upstream 1011667 20647320 ~ 20649616 (-) False AMCG00006807
TU140857 lncRNA upstream 1015388 20651041 ~ 20652840 (-) True AMCG00006807
TU140858 lncRNA upstream 1015388 20651041 ~ 20653659 (-) False AMCG00006807
TU140871 lncRNA upstream 1078430 20714083 ~ 20756786 (-) True G112496
AMCG00006773 mRNA downstream 1262 19623155 ~ 19631831 (-) True AMCG00006773
AMCG00006776 mRNA downstream 39862 19569734 ~ 19593231 (-) True AMCG00006776
AMCG00006775 mRNA downstream 225117 19403281 ~ 19407976 (-) True AMCG00006775
AMCG00006768 mRNA downstream 296797 19307131 ~ 19336296 (-) True AMCG00006768
AMCG00006767 mRNA downstream 498366 19095536 ~ 19134727 (-) True AMCG00006767
AMCG00006777 mRNA upstream 7965 19643618 ~ 19646890 (-) True AMCG00006777
AMCG00006780 mRNA upstream 43948 19679601 ~ 19781353 (-) True AMCG00006780
AMCG00006785 mRNA upstream 305404 19941057 ~ 19947697 (-) True AMCG00006785
AMCG00006790 mRNA upstream 335974 19971627 ~ 19981435 (-) True AMCG00006790
AMCG00006788 mRNA upstream 346513 19982166 ~ 19984437 (-) True AMCG00006788
TU140430 other downstream 1291883 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 1999648 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 3879858 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 4879123 14725651 ~ 14753970 (-) False G111621
TU140776 other upstream 600203 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 1218404 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 3768522 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 6864362 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 7766947 27402600 ~ 27527348 (-) True G113645

Expression Profile