RNA id: AMCG00006775


Basic Information

Item Value
RNA id AMCG00006775
length 1903
RNA type mRNA
GC content 0.47
exon number 6
gene id AMCG00006775
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19403281 ~ 19407976 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTAGGCTGGAATATGCTGACAGGAATGACAGGTTAACCTTCAACAGTCAAATTGTCGGGCCCTATGTACACCCACCCGACGCGCAAAAAGCGCaccatttaaaacacacttgTGCAACCATGCCCCCCCGGGCCGACTCTCTGCTGAACTATGACAACCCGGTCCTGGTGACCAAGAGACCGGATAAGTCATCAAAGGACCAGCCTTTAAAACTGAGACCCCAGCAAATGCCGTGGACCATGCCACCACCTCCACAACCTCCCAAGACAGCTGCAGATGATGCCAACGAGGAGCAGACAAAACAGCTTCTCCACGCTATCCTGCCTCCCAGGCTATGGATAGAGGACAACAAGCTGTGGGTGCAGCAGGTTTCCACCATACCCTCCACTCGGATGGACGTGGTGCACCTTCAGGAGCAGCTGGACCGGAAGCTGGAGATGAAACAGGGCCGCAAGACGGGGATCTGCCCCATACGCAGGGATCTATACTCGCAGTGCTTCGATGAACTCATCAGACAGAACACCATCAGCTGTGCCGAGCGCGGGCTCCTGCTTCTGAGGGTACGCAATGAGATCATGATGACCATCGCCGCCTATCAGACGCTGTACGAGAGCAGTATTGCCTATGGCATGAGGAAGGCCCTCCAAGCCGAGCTGAGCAAATCCAACATGAAGACAAAGATGTCTGATTTGGAAAACGAGAAGAAAGACTTGGAGAGGCAGTTGAGAGAGCTGAAATCAGTGCATGCGGCCTATGAGGAAGACGAAGCCGCGAGATGGCAGgtggaggaaacaaaacactCGGATGCATTGAAGTCCGTGACACGAAGCAACCAGCAACTCAGGgctCAGCTGGAAAGCATTTTTGCAGCAAAGGTACCAATTTAATAGTATGTGcttttgtaatatgtaattaacatatcagaagcactgcccaagggcgAAGATCTGTAAGCGATCTCACTGTACTCGCGCTGATTGTCACTGACACGTGAACGCTCTGCTCGGgtcagcttgtgtgtgtggcacCCAGCGAAGATGGAGAAGTCATGCTCCAGCCCCCTCCACAGTAAACGGCCGCCTGCCTGAGCCTCCGAGGTGTGCGCAAAAACCTCCTTGGGCAGTCGTTGAATCTATCCAATCAAATTGCAAAGAAGAGGAATCCGCTTTCAACCAATCGTGCTTTACTGCCTCCGAGGAGCCGCCTTCAACTACCTTGCAGGTGTGAAAGTGCAAAGGCGGGAATTAGTTTTGAAGGAGGCGAGAAGTAAAGGCTAGAGCCTGTATAACACTAGTATACTGTacttaattcaatttttaaagcaatataaccatgtatgcatgtacatatatatttaataaattgaGCTGATTAATATATTcaacataaatgtaaatgtatatttaacgTGAGTTCATTACCTCAAGAACGTGTCCTGTATGAGCTGCCCAAGTCTTTCAATAAAGCGTTTCTGTCATTCCTGTCCTGTATACTGTAGCTTATATGTCAGTGATATTATGATGATATTAGTGCAAACAATTTCAGATCTAGTAGAGTCTAGTTTTACTTTCAGAGACAGGACTGACAGAAATGCTTTATTCACTGAGCTGGAGTAATCGTACAGTACCAGTACCTGGGGTAATGTACCCatgtatacttttttatttaacgACCTGGGGTATTCACAAACTCACTGCTGTAAGGATGAAgtcaagtattttttttggttttcatgtACTCTCGTACATCTTTGCAGTACTGAGTACTTGAGTATTGTACAAGTTGAAACAGTAGCCAGCTACACTAGAAGTAGTGCTGCTAATAAGGACACAGATACACAGGgaaaatatacaccgatcagccataacattatgaccactgacaggtgaagtgaataacact

Function

GO: NA

KEGG:

id description
K10410 DNALI; dynein light intermediate chain, axonemal

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140523 lncRNA downstream 517235 18883628 ~ 18886046 (-) False G112205
TU140524 lncRNA downstream 517235 18883628 ~ 18886046 (-) True G112205
TU140511 lncRNA downstream 658064 18695072 ~ 18745217 (-) False G112195
TU140510 lncRNA downstream 658818 18695072 ~ 18744463 (-) True G112195
TU140448 lncRNA downstream 994504 18399263 ~ 18408777 (-) True G112140
TU140596 lncRNA upstream 843 19408819 ~ 19418420 (-) True G112270
TU140614 lncRNA upstream 106823 19514799 ~ 19515004 (-) True G112287
TU140615 lncRNA upstream 129229 19537205 ~ 19537793 (-) True G112288
TU140616 lncRNA upstream 133127 19541103 ~ 19541968 (-) True G112289
TU140617 lncRNA upstream 156980 19564956 ~ 19566015 (-) True G112290
AMCG00006768 mRNA downstream 66985 19307131 ~ 19336296 (-) True AMCG00006768
AMCG00006767 mRNA downstream 268554 19095536 ~ 19134727 (-) True AMCG00006767
AMCG00006765 mRNA downstream 357220 19006380 ~ 19046061 (-) True AMCG00006765
AMCG00006764 mRNA downstream 400500 19000927 ~ 19002781 (-) True AMCG00006764
AMCG00006763 mRNA downstream 440721 18939150 ~ 18962560 (-) True AMCG00006763
AMCG00006776 mRNA upstream 161758 19569734 ~ 19593231 (-) True AMCG00006776
AMCG00006773 mRNA upstream 215179 19623155 ~ 19631831 (-) True AMCG00006773
AMCG00006774 mRNA upstream 225117 19633093 ~ 19635653 (-) True AMCG00006774
AMCG00006777 mRNA upstream 235642 19643618 ~ 19646890 (-) True AMCG00006777
AMCG00006780 mRNA upstream 271625 19679601 ~ 19781353 (-) True AMCG00006780
TU140430 other downstream 1062071 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 1769836 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 3650046 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 4649311 14725651 ~ 14753970 (-) False G111621
TU140642 other upstream 225261 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 827880 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 1446081 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 3996199 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 7092039 26500015 ~ 26500681 (-) True G113530

Expression Profile