RNA id: AMCG00006776


Basic Information

Item Value
RNA id AMCG00006776
length 6992
RNA type mRNA
GC content 0.43
exon number 21
gene id AMCG00006776
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19569734 ~ 19593231 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTCCTCTGATGGGCTCttttttactgtgtgttttgcagacAGACTACTATTTTGCGTACACAGAATGTGACAGCACTGGGTCCCGGTGGCGAGTGGCTATACCCAACAACGAGGGAAAGTGTTCGGGATTACCCGATCCAGTCAGCGGCACAGAATGCACCTTTTCATGCGAAGCCGGACAGTTCTTGGAAATGTCCTCCCAGCAGTGTATCGAGTGTGCTGCCGGGACGTACTCCCTGGGCAGTGGGATCCGCTTTGATGAGTGGGACGATATACCAGCTGGCTTTACCAGTATAGCCACATACATGGACAATGGCCCCGGTGGGGAGGAGTCTCTGACGTGTAACAACTCTACCTGGGATCCTCAGGGGAATTACTTGGAATCGAATCGAGACGAGTGCACTGTGTCCTTGATCTACGCAGTGCACCTGAAGAAGCAAGGTTCGGTGTCCTTTGAGTACCAGTATGTGGACAACAACATCTTCTTTGAGTTCTTTATTCAGAATGACCATTGTCAGGAAATGGAGACATTGGATCAAAAGTGGATTAAACTAACAAGCAATGGAGAGTGGGGCACTCATACAGTAAACCTGAATTCTGGCACCAACATCCTATACTGGAGGACCACTGGAATATTACTTGGTTCCAAAATTGTCAAACCGGTGCTTCTGAAGAATATTCAGATTGAAGGAGTTGCATATACGTCAGAATGCTTTCAATGCAAGCCTGGTACCTTCAGTAAAACGCCTGGTTCTTCGTCCTGTGACGTTTGTCCCAGAAACACCTACTCGGGCAAAGGTGCCAGTTCCTGTACTCCGTGTGATGAGGAGAAACAGTATGCGCCGGAGGGATCAGCAGAGTGTAAAGACAAGCCTGTTTGTACAGCAAAAGATTACTTTCAGATTCACACACCTTGCGACAGCGAGGGAAAAACACAGATCATATACAAGTGGATTGAGCCGAAAATCTGCATGGAGAATGTAACCAACGCGGTGACTCTGCCTCCGTCTGGAGAGAAGAAGCCATGCCCCCCCTGTAACCCTGGCTTCTACAACAATGACACGGCCACCTGCTCGCCCTGCCCACCTGGCACCTATTCTGATGGCATTAAAGCGTGTCAGAAGTGCCCTGCTGGCACCGAGCCAACGCTGGGGTACGAATACAAGTGGTGGAACGTTCTGCCCGGGAACATGAAAACCTCCTGCTTTAACGTGGGCAACTCGAAGTGCGATGGGATGAATGggTGGGAGGTGGCTGGTGACCATATCCGCAGTGGAGCGGGAGGCTCAGACAATGACTACCTCGTTTTAAACCTCCATGTTCCTGGATTTAAacTTCCAACTTCAGTAACTGGGACTACAGGCAGCGAATTTGGCCGCATTACCTTCGTTTTTGAGACCATCTGTTCAGCTGACTGTAAACTCTACTTCATGATGGATGTGAACAGGAAAAGCACCAACGTGGTCGAGTCTTGGGTAGGAACTAAGGGAAAGCAATCCTACACCCGCGTTATGCCGAAAAATGCCTCTGTGTCCTACACCTGGGCATTTCAGAGGATTAACCAGGCCCAGGAGATTCGGAGGTTTGTAAACGACGTCGTGAAGATCTACTCCATCACGGTGACCAACGCCCAGGACGGGGTGGCCTCTTCGTGCCACGCCTGCGCGCTGGTCTCTCAGCAGTCCGGATCTTCCTGCATCCCCTGTCCTGCGGGACACTACATCGACAAGGACACCAACCAGTGTAAAGAGTGCCCCCCTGACACGTACCTCTCCATGCACCAGATTTATGGCAAGGAGGCCTGCATCCCCTGTGGGCCGGGCAGCAAGAGCAATAAGgAACACACGGTCTGCTTCAGCGACTgcaccttcacacacacagtcgaGAACCAGACCCTGACGTATGATTTGAACCAGCTTAGCTCTGTGGGATCAATAATGAATGGGCCTAGCTTCACGTCCAAGGGAACTAAGTACTACCATTTCTTCAATATAAGCCTGTGTGGACATGAGGGGCAAAGGGTGGCTGTCTGTACTGACAACGTGACAGACCTGTCGGCGAAAGACCTACAGAGCGAATCCAACGATTTCGTCAACTATGTGGAATCCTTTATTTGCCAGTCAACCATCATACCTTCAGACGGTCACGGGTTCAGAACGGCACTATCCTCGCAGTCCATTAGCCTTGCAGACATTTTCCTGGGAGCAACTGTTGAATCCATTCTGAATGGCACCGTTGTCAAGCCAGATCTGTTCTCTGACCCTCCAAAGAAACTACCAGATGTCAATTTCTTCTATCGGTCTCCACAAGCTACCTCGTCATGTGACAAGGGTCGAAACACCATTATATCACTGAGGTGCAACCCTGAGAAGACTGTCAGAGGAGAGATTTCAGTTCCCAGCAAATGCCCTGCAGGGACTTGTGACGGCTGTACTTTTAACTTCTTGTGGGAAAGTGCCGACGCCTGCCCACTGTGCACAGATACGGATTATCATGAAATAGAAGGAGCCTGCAAGGGAGGCGTTCAGGACACCTTGTATGTGTGGAACGAGCCGAAGCATTGCACTAAAGGCGTCTCCCTCCCAGTAAAGAAAACTCTGCCTTGTGAAGCTATAGACTTCTGGTTAAAGGTTGGCGCTGGAATTGGTGCATTCACTGCAGTGCTGCTGATTTCCCTGACCTGTTACTTttggaagaagaacaaaaaGCTGGAATATAAATATTCAAGGCTAGTGATGACCGCTAATAAAGAGTGTGAGCTCCCCGCCGCGGATAGCTGTGCGATAATGGAGGGCGAGGACAATGAAGACGAGGTGGTTTATTCAAATAAGCCGTCCTTGCTGGGAAAGCTGAAGTCAATAGCCACAAAGGGAAATGGAGAGAGCTGTGAGTCTGTTCAACTCAAATCATCCAAGAATGAGAGATGGGTTTGGGGATAAAAAGAGGTTTGGTTCGAATTCAAATACGCATTGGGAGAAACAGAAAccgaaaaacaaaatgcacaagaCCACTGTTAACAATATTCTGGATGATTTGTGGACCAGGAACTCCGCCAATGAAGATATTCTAGTTTGGTTGCCTTATTACTGGGATAAAATACCTTGCCAAAGGGGATTCAGACACACTGATGATGCACTGGGTATAAGTTAAGCTCAGGAAGAGCCCTGgaaaagggcgtctgctaagaaatacataataaaagaGAGACACCTTTGATACATATTTCTTTTGTTTGGTATTTTGCATTCTGGTTGCTTTTCTCTGGCTGTTTATAGGTTTAAGTAGTACTGTTTCTGTACAAGAAAGTTCCCAATAGGTCTTTCCTATGTTTCGAAATTAGGTAATGCAAGATTTAAACCTTCCCATGTGTTCAATACGATGGGCAGGAGCCAGCAGCATGCAGAGTAACTGTGCTCAGCAGACTGAAATCCCTCCATACCTCATCAGAGCGCCTACTTTATTTGAGTTGTTCATCTCATCATGCAGGTTCTGTGCAAGGAGACGTGAGGAGACTTGGAGGTCTGTTGTGAAATAGTCATGTTCATCTTGTGATAATGAATGGGGAAGAAAAACATGGAGAGTTTAAAGCCTTCttagctgtgtttttgttttgttatgtatgtattccttTTGACAATTCTGctccttttatgtttttgaacTGTGTTTTCCTCATATCAAATTATTGGTACTTGTAAATCTCACATTGCATATTGTGGAGTGATTTGCATAGATTCATTGgtattttgtaatcattttatcAGAGAGAGAacctatttattttgcacttttaattgACAGCGATCCTTCACCACATCTGAGTTTGTCATAGATATTTCCAGTCATATCATGTATTTGAATAGTCAACAGTGTGACATCTgtgggaaaaacaaagcaaactatTGAAATTGAATAAGAAGGCATCAGCTGCACAGATAAATACCATTTTCTTCTGCAATCTGTTGTTCAActctgcatatttattttgtttaactaggtgtttttgttgaaagtatatatattaaaacatactgTTCCTCAggtctttggtttgtttttgattttaacCAGCATTTGTGCAAGGGTTGTACATAAGttcacacagaaacattttaatgaccGTCCTCAGTTTAATACGTATTGAGCCATTCATGATAGTGTCAACAGCAGTAAAAGgcacaaaaacattaataaaacgGCTCCTAGTCCCATATACCTTTTATACCGTTCCTCAAATCCCATGCATAAGCAGTGAACATAAGACAATGAAAGGGAAGGAAAAGACACCAGAAATGTatgtttggggggtgggggtatggggcagaaataaatcatgttGTTCTCCACTAATGTAGACTGATCTATTCtcagaataaaatattgtcaactgtttttggtttgttagttATTTGTTTGGACCCCAGAGCAAGACTTTGTCCTCGGTATTTGATAACCTTGAATTCTGATTGAATAAAATCTggtaatataatgtattcagatttcattgattgtaattattattattcatatttttttaattcacagtaATATTCTTTTTAATGAAGGATTTTACATGAATTCAATAAAACGTACTGGTATTTGGTTTTCTGAAATCCATTTTGGAATGGACAGCTTAACCAGCCCCTGAGAGTAAAAGCAAAACTACAAAGAGAGTACTGctgaaatttattttaaagctgcaaGAACTCCACTGACAACAAAAATCACTGgaatatgttcattttacccagaATGCAATGCTATAAAAATCCTTCAGTTAGAAGACACTTAGTTTGACCTGTCCTCGTAAAAGTGGCTGGTAAAGGGGCACATTTTAAACTCAAGGTTTGCTTTATTATTGCAGAGAATTGTATTCCTTTACAGTCTTTCCTCAcatcttttttaaattgccGTGGTTCTATTAAATGATGTATACATTTGCGCATCAGCTTTTATTTGTCTATCTAAATCATCAATTGCAAcagatttaaaattgaaataacttGGAAACGTAAGCTTTCCATATTTTAAGGAATATTACAGTTGAGGCTTGTGAACAGTTGGTAGTAAACacttacatttcattattattttaaggtatAGCTGAAGACACAATCCaataacatatatacattattaatgtaagCCTAGAAGAACATCTGCTACACTCAagctatgttttatttaagaagAGTAAAAACAAACCCAGCAGTGAAGACAGAAAAAGCCCGCTGGACCTCAGGTTTAATTAAAGTCATGTCAGGCTTAGTTGGGCAGTAGAGAGGCCCTAAGATTTGCCGTTCAACATGAAAGTTTGCCATTCGCCAAGGGATAGTTACTAACTCACTGACTGTAAGTGTATTTTTCTCCGAATACAAAAGGAATTCTAAAGTTATTGGAAACTGCACTCGCTCTGCTGCTTTATTATGATGCAGCATGTGTTCAGTATGCTAATGAAGGATTAACAGTATCTTGTAAAGAACAAGGTGCATGTAAATCACATTTGGGTTTCCACTAGACactaaagtaaaacaaaggGGAAAATCAAAAAGACAACGCATGGGAAGGATCCACAAATAAAAGTGCACATTGTCTCTTGAGATACATTCTTAGAAGATGAAGAATGCGTGTTAATGCAGGGGACGGAGATGTGAAGGAACAGCAGGATAATTGGTGTCGGTTTTTACGTTTGGAACAGATTGTCCCCCTCAGGACACATTTCTTAGGTCAGCTGAGCATTTCTCTGCAACAGGAGACATCTGTTCCTTGGTGCCAGGGCCGATCTCCCTCGCAGGTCGTCTTCGGTGGTGCTGCAGAATCCTTTAAAGTAGATTTGGGTAATATTGGCCATGTTTACAATAGAATTAGCGCCTTGGCTTGCTTGTTCATTTGTCTTCACTTGGCCCAGCACTAAACACAAATGAATCTTGGGGGGAGGGAGTAAGGAACTTGGCCACAATCTGATTGGCCACAGGCAGCGCAGGCTTTGACTGTTAATTGTGGGTATAATGTAATGCCGGAGAATATGGCAGATTTGGAGCTTGTGAAACACGGAGCACCTGCCTTTACAAACTGCAATCCGATTTCTCCAGTTAATCTGATTTTGGAAACATTCTATAAACAAGGACTGCACAAGCGCCTCTCCTGCACCGATACTGAGAGGGTACACTGAATAATGTGGTGGCACATGTGGCCACAAAACACAAGGCTCTCTAACTGTCATCTAATGTAGAAGTGTCATATATCAACTGGAGAAACACTTTATGAGGTTGCCTTGGCTCAGGAATAATGTTTTGGGCTTTTGTGTGCCATACATATCATGGAGATTATATAGTGTAGGATAGTGGGACTATGAGTGACTGCTTTGGTTTATTTCCTTGAATTTGGCTATTTTGAGAATGGCCAGCTTGAAAGCCAACCCTTTTTTTGATGCTCTATCCCTCAATTTCGGAAGCCAGGGACTCCAATCATAGTCTGTCTGCAACAACTCGGCATGTGGAACGTATCCTCGGGGAGCGAGGAATGCACGAGCAGATAAGCCAcacaacaaaggaaaataatcttTCAGATGTGCTagcataaataaaatgcatgactaGGGGCATAAGATTACTTTACATAATCCGCCGCTTCCTGTTGTATTTTGGACACAAGGgtttctctgtattttattttgttcaaccACAGGAACTGGTGTGCAATTCAGATATTGCTCtgggatttagttttttctgcattttgcattctattctacatttttcacatttcccaAGACAGTGTTTTAAATGACCCCTGTTTTATTGCATGGCTGCACTCGAAGGCAAGACAAAGAGCGATGTTTGCAGATGTGCGAGTACCAATGCTCACgcttgtgtgtattttgtaggGTCGTATACATTTAAAGCTAAGTTGTACAAGTTCATGTTAAACCAATTTATAATGGTTCTTTCTTGTTGTCATGATTCTTTAATAAATGCGAACGGCTTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140619 lncRNA downstream 62 19568517 ~ 19569672 (-) True G112292
TU140617 lncRNA downstream 3719 19564956 ~ 19566015 (-) True G112290
TU140616 lncRNA downstream 27766 19541103 ~ 19541968 (-) True G112289
TU140615 lncRNA downstream 31941 19537205 ~ 19537793 (-) True G112288
TU140614 lncRNA downstream 54730 19514799 ~ 19515004 (-) True G112287
TU140629 lncRNA upstream 29990 19623221 ~ 19631895 (-) False AMCG00006773
TU140630 lncRNA upstream 29990 19623221 ~ 19631895 (-) False AMCG00006773
TU140765 lncRNA upstream 485660 20078891 ~ 20079411 (-) True G112410
TU140855 lncRNA upstream 1054089 20647320 ~ 20649616 (-) False AMCG00006807
TU140857 lncRNA upstream 1057810 20651041 ~ 20652840 (-) True AMCG00006807
AMCG00006775 mRNA downstream 161758 19403281 ~ 19407976 (-) True AMCG00006775
AMCG00006768 mRNA downstream 233438 19307131 ~ 19336296 (-) True AMCG00006768
AMCG00006767 mRNA downstream 435007 19095536 ~ 19134727 (-) True AMCG00006767
AMCG00006765 mRNA downstream 523673 19006380 ~ 19046061 (-) True AMCG00006765
AMCG00006764 mRNA downstream 566953 19000927 ~ 19002781 (-) True AMCG00006764
AMCG00006773 mRNA upstream 29924 19623155 ~ 19631831 (-) True AMCG00006773
AMCG00006774 mRNA upstream 39862 19633093 ~ 19635653 (-) True AMCG00006774
AMCG00006777 mRNA upstream 50387 19643618 ~ 19646890 (-) True AMCG00006777
AMCG00006780 mRNA upstream 86370 19679601 ~ 19781353 (-) True AMCG00006780
AMCG00006785 mRNA upstream 347826 19941057 ~ 19947697 (-) True AMCG00006785
TU140430 other downstream 1228524 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 1936289 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 3816499 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 4815764 14725651 ~ 14753970 (-) False G111621
TU140642 other upstream 40006 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 642625 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 1260826 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 3810944 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 6906784 26500015 ~ 26500681 (-) True G113530

Expression Profile