RNA id: AMCG00006777


Basic Information

Item Value
RNA id AMCG00006777
length 1362
RNA type mRNA
GC content 0.49
exon number 12
gene id AMCG00006777
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19643618 ~ 19646890 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGCTATAGGAGTGCATCTGGGATACACATGTGGTTGCGTGGCTATTTTTAAGGATGGCAGAGCAGATGTCGTGGCCAACGATGCCGGTGATCGAGTCACCCCGGccgtggtggcgtacagagagACCGAGCAGattgtgggACTGGCAGCAAAACAAGGCAGAATAAGAAACGCTGCCAACACAGTGGTAAAAGTGAAACAGATCCTGGGCAGAAGTTTCGATGACCCagaagcacagaaacacaaggCACAGAGTAAATGCTCAGTTGTCAATAAAGATGACAAGCCGAAGTATGAGATCGACACTGGGGACTCTACCAAATTAGTTTCGCCGGATGATGTGgcaaaattgatttttaaaaagatgaaagaAACCGCACAGTCTGCTTTGGGATCAGATGTCAATGATGCCGTCATTACAGTCCCTTTTGAATTTGGAGAGGCTCAGAAAAATGCGCTACGACAAGCAGCGGAGGTGTCTGGTTTCAACGTGTTGAGATTAATTCATGAACCTTCAGCGGCACTGTTGGCTTATGGGATTGGCCAAGACTCTCCAACTGGAAAAAGCCACGTGCTTGTTTATAAGCTTGGAGGGACGTCCCTGTCCGTGACGGTGATGGAGGTGAACAGTGGACTGTATCGAGTCCTGGCCACACAGTCCGACGGCAGCATTGGTGGAGAGAGTTTTTCAGAGGCTCTCGCCCAATATTTAGCATCTGAGTTTAAAAAATCCTATAAACATGACATCACGGGCAATCCTAGAGCTATGCTGAAGCTGATGAACAGCGCAGAGGTTGCAAAGCACACCCTCTCTACTCTGGGGAGCTCAAACTGTTTTGTCGACTCTCTCTTTGATGGAATGGACTTTGACTGCAATGTCTCTAGAGTATACAGCCAATCAAAAATCTCTTGGACCAAGTCGGTCTTTCTACAAATGACGTCAGTGGTGCTGTGTGGGGGCTCTGCAAAGATCCCCAAGCTCCAGCAGATGATTCGGGATCTGTTTCCAGATGTGGAGCTTCTGAATTCCATCCCCCCCGATGAAGTCATTCCAATTGGTGCTGCCATTGAGGCCGGGTTGCTGCTGGGGAGGGACGCCCTGGAGGAGGATTCTATAACGGTGGATTGTTGTGCCAAGGATATTCTTGTCAAGgaGGCTGATGATTCGGGGGCGGACATCTATACAGTTTTGTTACCGTCTGGCACCCCTCTGCCTGCAAGGAGGCAGCACGTTCTGCAGAGTCCAGGGAGCCTCTCTTCGGTCTGCCTGGAGCTGTACCAGTCCCAAGGGCACAACTGCTCCATAGAAGAGAAACTGGCACAGGTAACCTTGTGCAAAGAATATCTAGTTGTTTAA

Function

GO:

id name namespace
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0005524 ATP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140629 lncRNA downstream 11723 19623221 ~ 19631895 (-) False AMCG00006773
TU140630 lncRNA downstream 11723 19623221 ~ 19631895 (-) False AMCG00006773
TU140619 lncRNA downstream 73946 19568517 ~ 19569672 (-) True G112292
TU140617 lncRNA downstream 77603 19564956 ~ 19566015 (-) True G112290
TU140616 lncRNA downstream 101650 19541103 ~ 19541968 (-) True G112289
TU140765 lncRNA upstream 432001 20078891 ~ 20079411 (-) True G112410
TU140855 lncRNA upstream 1000430 20647320 ~ 20649616 (-) False AMCG00006807
TU140857 lncRNA upstream 1004151 20651041 ~ 20652840 (-) True AMCG00006807
TU140858 lncRNA upstream 1004151 20651041 ~ 20653659 (-) False AMCG00006807
TU140871 lncRNA upstream 1067193 20714083 ~ 20756786 (-) True G112496
AMCG00006774 mRNA downstream 7965 19633093 ~ 19635653 (-) True AMCG00006774
AMCG00006773 mRNA downstream 11787 19623155 ~ 19631831 (-) True AMCG00006773
AMCG00006776 mRNA downstream 50387 19569734 ~ 19593231 (-) True AMCG00006776
AMCG00006775 mRNA downstream 235642 19403281 ~ 19407976 (-) True AMCG00006775
AMCG00006768 mRNA downstream 307322 19307131 ~ 19336296 (-) True AMCG00006768
AMCG00006780 mRNA upstream 32711 19679601 ~ 19781353 (-) True AMCG00006780
AMCG00006785 mRNA upstream 294167 19941057 ~ 19947697 (-) True AMCG00006785
AMCG00006790 mRNA upstream 324737 19971627 ~ 19981435 (-) True AMCG00006790
AMCG00006788 mRNA upstream 335276 19982166 ~ 19984437 (-) True AMCG00006788
AMCG00006789 mRNA upstream 339857 19986747 ~ 19999501 (-) True AMCG00006789
TU140642 other downstream 7693 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 1302408 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 2010173 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 3890383 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 4889648 14725651 ~ 14753970 (-) False G111621
TU140776 other upstream 588966 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 1207167 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 3757285 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 6853125 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 7755710 27402600 ~ 27527348 (-) True G113645

Expression Profile