RNA id: AMCG00006780


Basic Information

Item Value
RNA id AMCG00006780
length 585
RNA type mRNA
GC content 0.47
exon number 6
gene id AMCG00006780
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19679601 ~ 19781353 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGAAAACTGCACTATCGATGGTGGGGACAGTGAAGAAAGAGATGCCTCGTCCGATCCCAAATCCGGAACGAGGTCACAGAAGATTTCTCAGCAGGAGGCAGGAATCACAAATCTAGCTAACGTTAAAGTTACCTCGGCTCACAAGCTGGGGATCCCCAATACTGAGGAAGACTGGGCTAGCTCTTCAGTCAAGAAGTATGCACAGATCGGGACTGTTGATGACAATAATCGCTGCACAGACAGTCAATCTGAGCAAAAGCATGTTTTCAGCCTGGTGTCAAGAGTACTCGCCTTCTTGTTGCCCCTGCTGACCATTTCCATTTGCTACTCCTCCATTGCCATCAAACTCCACCGACACTTCAAACGAATgaacaaggaagaaaaatacaagagGAGGTCAGTGAAACTCGGGCTGTGGATCATCGCCATGTTCATTGTCTCCTGGCTTCCCTTCAACATTTTGGCAACCttcaAGCTGAAAAAAACCACAACAGCAAGAATAAACAAGAAGAAAGATAGGCGTTACTTTCCTGATGAGCTGGCCTGGGTGAAGCACTTAAATGCCAAGGAAAGGGAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140629 lncRNA downstream 47706 19623221 ~ 19631895 (-) False AMCG00006773
TU140630 lncRNA downstream 47706 19623221 ~ 19631895 (-) False AMCG00006773
TU140619 lncRNA downstream 109929 19568517 ~ 19569672 (-) True G112292
TU140617 lncRNA downstream 113586 19564956 ~ 19566015 (-) True G112290
TU140616 lncRNA downstream 137633 19541103 ~ 19541968 (-) True G112289
TU140765 lncRNA upstream 297538 20078891 ~ 20079411 (-) True G112410
TU140855 lncRNA upstream 865967 20647320 ~ 20649616 (-) False AMCG00006807
TU140857 lncRNA upstream 869688 20651041 ~ 20652840 (-) True AMCG00006807
TU140858 lncRNA upstream 869688 20651041 ~ 20653659 (-) False AMCG00006807
TU140871 lncRNA upstream 932730 20714083 ~ 20756786 (-) True G112496
AMCG00006777 mRNA downstream 32711 19643618 ~ 19646890 (-) True AMCG00006777
AMCG00006774 mRNA downstream 43948 19633093 ~ 19635653 (-) True AMCG00006774
AMCG00006773 mRNA downstream 47770 19623155 ~ 19631831 (-) True AMCG00006773
AMCG00006776 mRNA downstream 86370 19569734 ~ 19593231 (-) True AMCG00006776
AMCG00006775 mRNA downstream 271625 19403281 ~ 19407976 (-) True AMCG00006775
AMCG00006785 mRNA upstream 159704 19941057 ~ 19947697 (-) True AMCG00006785
AMCG00006790 mRNA upstream 190274 19971627 ~ 19981435 (-) True AMCG00006790
AMCG00006788 mRNA upstream 200813 19982166 ~ 19984437 (-) True AMCG00006788
AMCG00006789 mRNA upstream 205394 19986747 ~ 19999501 (-) True AMCG00006789
AMCG00006795 mRNA upstream 266588 20047941 ~ 20053808 (-) True AMCG00006795
TU140642 other downstream 43676 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 1338391 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 2046156 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 3926366 15752821 ~ 15753235 (-) True G111767
TU139786 other downstream 4925631 14725651 ~ 14753970 (-) False G111621
TU140776 other upstream 454503 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 1072704 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 3622822 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 6718662 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 7621247 27402600 ~ 27527348 (-) True G113645

Expression Profile