RNA id: AMCG00006782


Basic Information

Item Value
RNA id AMCG00006782
length 3257
RNA type mRNA
GC content 0.43
exon number 8
gene id AMCG00006782
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19966029 ~ 19971398 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGTTGCCAGTAGTTGAGTAGAAGAGCCCTTTGCATTGGTTAAAGTGCAGCAGCCTTCTCTAGCCATGTCTGTTCGGGAGTCCTTTAACCCCGAGAGCTACGAACTGGACAAGAGTTTTCGACTCACGCGCTTCACAGAACTGAAAGGCACGGGGTGTAAAGTTCCACAGGATGTCTTGCAAAAGTTATTGGAATCCCTTCAGGAAAACCACTTTCAGGAAGATGAACAGTTTCTGGGAGCAGTCATGCCCAGGCTTGGCATTGGGATGGACACGTGCGTCATCCCTTTAAGACACGGTGGCCTTTCGCTGGTCCAGACGACAGACTACATTTATCCCATCGTTGACGACCCCTACATGATGGGCCGTATCGCATGTGCCAATGTACTAAGTGACTTGTATGCCATGGGCGTGACAGAATGTGACAATATGTTGATGCTTCTCGGAATCAGCAATAAACTGTCAGATAAGgAGAGAGACAAGGTGATGCCTCTAATAATTCAGGGTTTTAAGGATGCAGCGGAAGAGGCCGGGACATCGGTAACTGGAGGACAGACGGTGCTAAACCCGTGGATCGTGCTTGGTGGAGTGGCGACGACTGTGTGCCAGCCCAATGAGTTCATCATGCCAGACAACGCGGTACCCGGAGATGTACTAGTACTGACGAAACCCTTAGGAACACAAGTAGCCGTGGCGGTGCACCAGTGGCTGGATATCCCAGAAAAATGGAACAAAATCAAGCTGGTCGTGACGCAAGAGGATGTGGAGTTGGCGTACCAGGAGGCCATGATGAATATGGCACGACTAAACAGAACCGCGGCTGGACTCATGCACACGTTCAACGCCCACGCCGCCACAGACATCACGGGGTTCGGCATCCTGGGTCACGCACAGAACCTGGCCCGGCAGCAGAGGAACGAAGTGTCATTTGTCATCCACAACCTGCCCGTCCTGGCGAAGATGGCCGCCGTGAGCAAAGCGTGTGGGAATATGTTTGGCCTTATGCACGGTACCTGCCCAGAAACATCCGGAGGTCTTCTGATCTGTTTACCTCGCGAACAAGCAGCTCGCTTCTGTGCCGAGATCAAGTCTCCGAAGTACGGCGAGGGCCACCAAGCTTGGATCATCGGCATCGTAGAGAAAGGAAACCGCACAGCCCGAATCATCGACAAGCCGCGAATCATCGAAGTCGCCCCGCAAGTCGCCACACAGAACGTTAACCCCACCCCCGGTGCCACGTCTTAATTTAGGGAAGGGAGTGGGTGAATTTTTAGAGAGATATTCTTGTACCATCCTAGAGTATACAAACTGCGATGTTAATTTGTATCTCCTCTGCCCATATGTTGGCCTTAGGGCAGTTCATGTGCGGATACAatttaagacaaaaaagaataaatccattgccttttgtgtttattattttctgttacatTAACTGAAGATGCACCTAATCTTAAGGCAGCTTCTAAGTTGAGAATATTATCCAATACTGTTGATTCATTTTGAATCTTTAGACACTTATCGTCTTTTGCCGTATAGGCTCTTTTTAAAGGTGCTTTCACCGAGCACACATTACCAACAAGTAGCGTGATAGCGTTTTTGTTTGTCCGTTCACTATGTGTACAATTAAAACCTAGGACTAGTGTAAACGCAGTAACAGATGCCTTGAAAGATTGAGAGAGAAACGATGTATGTGAGAGAGACCAGGAGATGTAAAACTTATGTAAAGGGTtgcatgttttttcagttttttgttgttgttaatttctCTGATTTTAGGTCTGTATTGTTTTGTCCAATGGTTCAAAAGCATTACTGCCATcgttcattttttatgttttatttttaagaagtaGCACATTCTGCAAAGCAGTTTGTCATCGAGTGCTCACACTGCATGGCAAGCACTTTTAATTGAaggatataaaaaatacaaatttcattCTTCCTAGGCGATAACACTtactgtatttgcaaagatCTGTTGGTGTATTATGGTCTGTTTCTGCGAGGAACAGTGCTCATCCCTCTGCTCAGTACAGGGCAGGAAATGTAGCGgccaaaacaaaaagttgtTACTGTACGATACACTTTTGCTGTCTAAGAAATATTAAGtacacaaataattttaaatataatcagtAATGATCTGTTCTGTGGTCAGTagtgtttattacattttatattttgtatagcgctatatagacttttttttttggttctggtttattttcatatttgcatcAGCTAATGTTCCTTATGTTCCCTCGCTTTTCCCCCTTTCTATTCTGCTAAATAATGTGCACGCTCTTGTGACAATGTACAACTTGCCAACAGCTTGAGGTAAAACTTAtcccaataaatatttaatttttttattgctcttgtataagagatgtatttgtctttttatatattaaaaaagcatatGGGAGAGATGTCccatttctcacatttaatTCTACGTTAGCgaacattttttagtttttgaacCATAAACgctaatattttttccaaatttaGATGAAACTGGATCCTTCATGATTAGGAATGCTTTTTATATTGCTATGGTATTAATCATCCATTGTATTCGATACAAATCAGTAATCTATGCATAGAGAAACACCAACTGTGACCATAGAGTATAAGTGTGGGGTGTCCATGTCAGAACCGTGGTGCTGTGTTTTGTAGAACGCAAACCGATGTCTGGCCTTTAGTCTGACATTGCTGTACTGTTGATGCTGTACAACAACACCAAGTACTGTTTTCATTCTTGACTGTTGCCTCGGTGTGTCTGTATTAAGGATGCAATTTGTGGACGGGGAGGGCGGGGATTTTATCTCAGATTAATCTTTTTAAGTTTAGCTAGTTTTTAATTACGGGCTGGGGGTCGTCAGGGTGATCTCTTGAATTGAATCAGTATTTCGGGTGTTTTGTTTACGGGCTCACACGGCTCTTTTTTTTGTGCCTCTTCAATAAAGGCAGCTTACTGTTAACCTACTCAGCGCTTcgatatttttctttccatcctCAGGACTTCACGTCTATCATTGTCTCCACATGGCCGAAATCAACAGTTGCAATATTAAAAGATGCCCAGTTGATGACAAATCTCAGCTTTATAAGACGTTGAAGACTTTATAAGATGTTTTTTCACAATAAGTGcttgctgtgtgttttatgaGATGTAATTGATTAGATTGCTCAGGTCTGTTGTCTGCCTGGCTAATTCTGCTTGGTTTGAAGTTGGCTGCTCC

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005886 plasma membrane cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0004756 selenide, water dikinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K01008 selD, SEPHS; selenide, water dikinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140697 lncRNA upstream 25054 19940493 ~ 19940975 (+) True G112350
TU140640 lncRNA upstream 320073 19643651 ~ 19645956 (+) True G112305
TU140636 lncRNA upstream 330805 19633239 ~ 19635224 (+) True G112302
TU140622 lncRNA upstream 337865 19626813 ~ 19628164 (+) True G112295
TU140602 lncRNA upstream 470264 19495534 ~ 19495765 (+) True G112275
TU140733 lncRNA downstream 11607 19983005 ~ 19983296 (+) True G112380
TU140780 lncRNA downstream 304595 20275993 ~ 20276232 (+) True G112424
TU140786 lncRNA downstream 566545 20537943 ~ 20538220 (+) True G112430
TU140791 lncRNA downstream 591659 20563057 ~ 20563275 (+) True G112435
TU140792 lncRNA downstream 592100 20563498 ~ 20563788 (+) True G112436
AMCG00006784 mRNA upstream 10190 19949141 ~ 19955839 (+) True AMCG00006784
AMCG00006781 mRNA upstream 32833 19884722 ~ 19933196 (+) True AMCG00006781
AMCG00006783 mRNA upstream 91440 19872006 ~ 19874589 (+) True AMCG00006783
AMCG00006778 mRNA upstream 259099 19697431 ~ 19706930 (+) True AMCG00006778
AMCG00006779 mRNA upstream 315335 19647130 ~ 19650694 (+) True AMCG00006779
AMCG00006786 mRNA downstream 25126 19996524 ~ 19999748 (+) True AMCG00006786
AMCG00006787 mRNA downstream 44547 20015945 ~ 20047024 (+) True AMCG00006787
AMCG00006791 mRNA downstream 290902 20262300 ~ 20262799 (+) True AMCG00006791
AMCG00006792 mRNA downstream 373003 20344401 ~ 20355364 (+) True AMCG00006792
AMCG00006794 mRNA downstream 559957 20531355 ~ 20535351 (+) True AMCG00006794
TU139270 other upstream 6922581 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 10398678 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 11241963 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 11789243 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 12310835 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 966099 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 1076938 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 1171467 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 4060715 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 4333381 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile