RNA id: AMCG00006784



Basic Information


Item Value
RNA id AMCG00006784
length 1146
RNA type mRNA
GC content 0.52
exon number 6
gene id AMCG00006784
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19949141 ~ 19955839 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTACTACACGCAGGAGTCCTGCTTTACATTGCATTCCTTGGGCTTTATTGCACAGCCTTCAAACATGGagttttctgaaaggaaaaGGAGCAGGAAATCGCAAAGCTTCAAATTGGTTAACGAAGAAGATTATGAGGCAGAGTACTTTGGTTGTAATAACACCACAGACATCAATGGGGAACTAAAAGATGCAACAATGGCTGAAGCCTGGCTGGGTGATGAAGGCATGGAGATTAAAAAGCAGATCACGGGCATGATGAGGCTCTTGAATGACAAGGCCGGCCGGGTGTACCAGAGAGTGGGGAAGGAGGGCGAGAACCTGAAACAGGAGCCCCAGGAGGTGGACCTGAGGTGGGCCCAGGCTGCGTGCGCTGCCGTGCCTTCTCCCTCTGCCAGCCAGGAGGACCCCCAGCACAGCACCTGGAACCAAGAACCTGCAGCCAGACCTCAGGTGTCTGGGCAGTATGGAACCCGATCCAAGactttgaaaatgattaataaaacaaagaacacagtcaaaacaaatgGAACTGTGGAAAAGCAGCGGGCCCAGAGCAGTGTCAGTGCCACACGTTCCTCTGCCCCCCGAAAGAGGACCCGGAAACGGAGGCCCGTCCACAAAGTCAGCGCTCCGGCCGTGAGCAACAGAAAGCCCGGCAGCCAGCCCTGCAGCACGCCAGAGCCCAgcgggaggagagagagagcagccaggGACAGATCAGTCCTGCCCCAGCCAGCTTCAGCTGTGGCCACAGAAAACCACGTCCCTCAATATGGGCTTATCAGAGAAATGCCTTCCTCAGAACCTGAAGTCCAACTGGCAGAGGACTATGATGTCTACATACCAAAATCCCAGCTGGACTCCATCCTTGTGAATTACACTCGCTCTGGAAGCTTGCTGTTCAGGAAGCTGGTGTGTGCCTTCTTCGATGACACGACACTAGCAAACTCCCTCCCCAATGGCAAGAGGAAGAGGGGTCTGAATGACAACAGGAAGGGACTGGATCAGAACATAGTGGGAGCTATTAAAGAGAAGTATTGCACTGCGAACAGAATTGAAAAGCTCCCTGGACCAAGAGATTGGGTACAAATTCTTCAGGATCAGATTAAACTGGCCAGGAGACGGTTAAAAAGAGGCAATGTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU140697 lncRNA upstream 8166 19940493 ~ 19940975 (+) True G112350
TU140640 lncRNA upstream 303185 19643651 ~ 19645956 (+) True G112305
TU140636 lncRNA upstream 313917 19633239 ~ 19635224 (+) True G112302
TU140622 lncRNA upstream 320977 19626813 ~ 19628164 (+) True G112295
TU140602 lncRNA upstream 453376 19495534 ~ 19495765 (+) True G112275
TU140733 lncRNA downstream 27166 19983005 ~ 19983296 (+) True G112380
TU140780 lncRNA downstream 320154 20275993 ~ 20276232 (+) True G112424
TU140786 lncRNA downstream 582104 20537943 ~ 20538220 (+) True G112430
TU140791 lncRNA downstream 607218 20563057 ~ 20563275 (+) True G112435
TU140792 lncRNA downstream 607659 20563498 ~ 20563788 (+) True G112436
AMCG00006781 mRNA upstream 15945 19884722 ~ 19933196 (+) True AMCG00006781
AMCG00006783 mRNA upstream 74552 19872006 ~ 19874589 (+) True AMCG00006783
AMCG00006778 mRNA upstream 242211 19697431 ~ 19706930 (+) True AMCG00006778
AMCG00006779 mRNA upstream 298447 19647130 ~ 19650694 (+) True AMCG00006779
AMCG00006771 mRNA upstream 306970 19636117 ~ 19642171 (+) True AMCG00006771
AMCG00006782 mRNA downstream 10190 19966029 ~ 19971398 (+) True AMCG00006782
AMCG00006786 mRNA downstream 40685 19996524 ~ 19999748 (+) True AMCG00006786
AMCG00006787 mRNA downstream 60106 20015945 ~ 20047024 (+) True AMCG00006787
AMCG00006791 mRNA downstream 306461 20262300 ~ 20262799 (+) True AMCG00006791
AMCG00006792 mRNA downstream 388562 20344401 ~ 20355364 (+) True AMCG00006792
TU139270 other upstream 6905693 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 10381790 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 11225075 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 11772355 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 12293947 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 981658 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 1092497 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 1187026 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 4076274 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 4348940 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile