RNA id: AMCG00006785


Basic Information

Item Value
RNA id AMCG00006785
length 1836
RNA type mRNA
GC content 0.44
exon number 10
gene id AMCG00006785
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19941057 ~ 19947697 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATAACCGCAGTAGCGCAAAATGGCATCCAGGCTTCGGCAGTTCACGGACGGGTTCGTGCGTTTCCGACGAGGACTCTGATTGGATAAACCTCAGCGGAAGTGTGCGGCTACTACTTCCTGTTTTGGTGCGATACTGTAGCCCTCTAGTATCATTTGGGTCCCGTCTTACAATGatggatattttaaaagctgaaataGCCCGGAAAAGAAAACTCGTCGAGGAAAAGGAGCTTGTTGATgGAACAAAGAAATACTTTAAACGCAGTGAACTTGCCCGGAAGGAAGAAGAAGCCTATTTCGAAAGGTGTGGGTATAAGttACAACATAAAGAAGAAGAAGTCAAACcatccacctcctcctccaatCCAGTCCTGGAACTGGAATTGACTGAAGAGAAACTGCCCATGACACTTTCACGACAAGAGGTAATAAGACGTCTGCGGGAACGTGGCGAACCGATTCGATTGTTTGCAGAATCCGATTATGATGCCTTTCAGCGACTCCGAAAAATTGAAATTTTAGCTCCTGAAGTAAACAAGGGTTTAAGAAATGATCTGAAGGCAGCCCTTGATAAAATCGACCAGCAGTATCTGAATGAAATTGTGGGAGGTCAAGAACCGGGAGAAGAGGACAAACAGAATGACCTTAAAGTCCATGAAGAAAACACCACAATTGAAGAGCTTGAGGCTTTAGGAGAATCTCTTGGGAAAGGCGATGATGACGGAGACATGGAAATTATAACAAAGGTTTTGAAGTTCCTGCTGGGTGTGTGGGCCAAAGACTTGAATGGCCGAGAGGACTACGTGAAGCGCAGCGTCCAGGGGAAGCTGGCCAGTGCCACCCACAAGCAGACTGAGTCCTATCTCAAACCTCTCTTCAGGAAGCTGCGCAAAAGAAATCTTCCTGCGGACATCAAAGAATCAATCATAGACATTATCAAATTCATGTTACAACGAGAATATGTCAAGGCAAATGATGCATATCTTCAGATGGCTATTGGGAACGCGCCCTGGCCCATTGGGGTGACCATGGTCGGCATCCACGCCCGTACAGGCCGAGAAAAAATCTTCTCCAAACACGTGGCTCATGTGCTGAACGATGAAACccagagaaaatacattcaGGGGCTGAAAAGATTGATGACGTTTTGCCAAAAGCATTTCACAGCAGACCCCTCCAAGTGTGTGGAGTACAACGCCTTGTGAAAGTCTCTCTTGCCCAGGATTGGAAACCAGAGACATCGAAAAGAGTGTCGCCTATTTTCACGTGTCTGTTTCGTGTGCTTGTAAATAGTTTCTGCAACTATATAACTGAATCCTTTTTGTTCAGAATATGGtaattttttatattctttgtGTATGCCTTGTTCAGCTAAGATGCAAATGTGGACGAAGTGTATCCTCACCTCCGTCACAGTTGTGTTGGGTCACTGCATGTGAAATTGAATAGGTTCTACTTTTCAATTACATCATGTTGTCTGTTAGCCGGGATGTGTAAGTTTTATTATACAGTTCCAGCATAGTCCGATTGAAACAACTGTATTGAACAATCGGCACACATCCCATTACAAACCCTTTCTCCTGTGATTTATGATGGAGGTTAGCAGAAAGGTACTAGACATTAAATCCAGTatccctttttaaatattttacattccGGCATGAATGAGGTCGGTTTATTTAACTTCTTTGATCACACAAATGTAGTTGAGTTTGGTTTATACTTCGGCATACTTTCTAGCGAGTCATGTTGGAGTCTAGGTCAGCGTAGAAGTGTCTTGCAGTGGGTGGTCATGGCTGTCAGGGTAGATTCCTGTAAAGAGAGGcgagtgggag

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component

KEGG:

id description
K12817 PRPF18, PRP18; pre-mRNA-splicing factor 18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140629 lncRNA downstream 309162 19623221 ~ 19631895 (-) False AMCG00006773
TU140630 lncRNA downstream 309162 19623221 ~ 19631895 (-) False AMCG00006773
TU140619 lncRNA downstream 371385 19568517 ~ 19569672 (-) True G112292
TU140617 lncRNA downstream 375042 19564956 ~ 19566015 (-) True G112290
TU140616 lncRNA downstream 399089 19541103 ~ 19541968 (-) True G112289
TU140765 lncRNA upstream 131194 20078891 ~ 20079411 (-) True G112410
TU140855 lncRNA upstream 699623 20647320 ~ 20649616 (-) False AMCG00006807
TU140857 lncRNA upstream 703344 20651041 ~ 20652840 (-) True AMCG00006807
TU140858 lncRNA upstream 703344 20651041 ~ 20653659 (-) False AMCG00006807
TU140871 lncRNA upstream 766386 20714083 ~ 20756786 (-) True G112496
AMCG00006780 mRNA downstream 159704 19679601 ~ 19781353 (-) True AMCG00006780
AMCG00006777 mRNA downstream 294167 19643618 ~ 19646890 (-) True AMCG00006777
AMCG00006774 mRNA downstream 305404 19633093 ~ 19635653 (-) True AMCG00006774
AMCG00006773 mRNA downstream 309226 19623155 ~ 19631831 (-) True AMCG00006773
AMCG00006776 mRNA downstream 347826 19569734 ~ 19593231 (-) True AMCG00006776
AMCG00006790 mRNA upstream 23930 19971627 ~ 19981435 (-) True AMCG00006790
AMCG00006788 mRNA upstream 34469 19982166 ~ 19984437 (-) True AMCG00006788
AMCG00006789 mRNA upstream 39050 19986747 ~ 19999501 (-) True AMCG00006789
AMCG00006795 mRNA upstream 100244 20047941 ~ 20053808 (-) True AMCG00006795
AMCG00006796 mRNA upstream 627100 20574797 ~ 20578476 (-) True AMCG00006796
TU140642 other downstream 305132 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 1599847 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 2307612 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 4187822 15752821 ~ 15753235 (-) True G111767
TU139786 other downstream 5187087 14725651 ~ 14753970 (-) False G111621
TU140776 other upstream 288159 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 906360 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 3456478 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 6552318 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 7454903 27402600 ~ 27527348 (-) True G113645

Expression Profile