RNA id: AMCG00006786


Basic Information

Item Value
RNA id AMCG00006786
length 1555
RNA type mRNA
GC content 0.41
exon number 5
gene id AMCG00006786
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19996524 ~ 19999748 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGCCGATCCGCCATCAAAACGGTTCTGTGAAAGTGGGCGTCTCCGGAACTCTGTATCATGTGGCGCACCTTTCGCTACATCCCAAATCCATCACAGTACAGGTTAAAACATGACTCACGATCTTCATAACTATTCTCATTTATTAAAATTTCAATTTGTTATCAGCGCCAAAGCTCAAaccagccacacacacacaccggtcAGATGTGTTCTTCGTAATCATCGTAATGCAGGAGAGTCAGACACGATTGCATCTTCACAGAAATAAGCTTTATAATACAGtctatatttaaagtaaaatggcTTTATGTGTAGTTATCTGATTGCGTCCCCAAATGGCGTATTTAAACACTGCATTTGCCTGGGGGAGGAGATGTAAGTACGGCATGGCGCGCTGCCCATGTGTTGTGTACGGCGGATGTTGTCGTTGTGCAGGGGAGCAGAGGCGCCTGCTATAGGAGTAGCGGGACTTAACTGATAAAGAGGAATGCCGTCCAATGTGGAGATCAAAGCTGCGGTTCACGACATTCAGATTCTGACTCGGAAGGCCAAACAGCTCAGCCAATCGGAAGGAACAATCATTTTGCAACAAGACACCTTTTTTAATGTGCAAAAGGGTCGTCTGAAGCTTAGGAATTTAATGAATGGGAGTGGCCAGTTAATATTCTATGACAGGCCAGATGTGGACGGACCAAAGCTCTCAAATTACTCCATCTCTCTCACGAATGATCCAGATGGACTTGCAGAAGTTCTTTCTGCTTCCTTGGGGGTCAAGGGAACAGTGAAAAAAGAGCGACACCTGTACATGGTTGGACAGACCAGGGTCCATGTGGACACAGTTGAGGGCCTGGGTCACTTCATGGAACTGGAGGTGGTGCTTAAAGATGGTCAGAGTGCAGAGGAAGGTGAAGACATCACTCACAAATTAATGGAAGAGCTGGGCGTGAAAAAGGAGGACCTTCTTGTTGGAGCTTATATGGATCTTTTACTAGCGGATAAAAAATTCTGAATATGAACACAAGTTAGGTCACattacatgtacagtacataattacattatcttctgtgttgttgttaataaattGATGGAAACATCTTTTTGATTTCCTCTTTAAATGGATCCCTGACTCTGGAACTCTTCTTACTAGTGAATCTAATGATGTGAAATGTATGTCTTTCCATTGAGTTCAATAACTCAGACCATGGACGAACCTTAGGATATCCAGTTGGGTGCATCTGAGAGAAAAGTAAACGGCCCCAAAAGAGGACATTTACATGTAGGGTTGAAAGCCAAAATATAGAATCCATGTCCATTATCTACTTTGTAAAGATATGTCTTTTCATGTTTATACTATATAATAGCAATGTCATAATAAATGCATCTTATTTGAATTTCACTGAATGCAGGTATCAATATGAATATAGTGCATTGCTTACAATAGTCTTTCATATGTGGTGGATTTGTGATTATCCATTTTCAGTTGTATAGTCGGGGCATACAACGCATCcattttcaaatcaataaacagcatggattattttagtttttaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140733 lncRNA upstream 13228 19983005 ~ 19983296 (+) True G112380
TU140697 lncRNA upstream 55549 19940493 ~ 19940975 (+) True G112350
TU140640 lncRNA upstream 350568 19643651 ~ 19645956 (+) True G112305
TU140636 lncRNA upstream 361300 19633239 ~ 19635224 (+) True G112302
TU140622 lncRNA upstream 368360 19626813 ~ 19628164 (+) True G112295
TU140780 lncRNA downstream 276245 20275993 ~ 20276232 (+) True G112424
TU140786 lncRNA downstream 538195 20537943 ~ 20538220 (+) True G112430
TU140791 lncRNA downstream 563309 20563057 ~ 20563275 (+) True G112435
TU140792 lncRNA downstream 563750 20563498 ~ 20563788 (+) True G112436
TU140795 lncRNA downstream 565778 20565526 ~ 20571427 (+) True G112438
AMCG00006782 mRNA upstream 25126 19966029 ~ 19971398 (+) True AMCG00006782
AMCG00006784 mRNA upstream 40685 19949141 ~ 19955839 (+) True AMCG00006784
AMCG00006781 mRNA upstream 63328 19884722 ~ 19933196 (+) True AMCG00006781
AMCG00006783 mRNA upstream 121935 19872006 ~ 19874589 (+) True AMCG00006783
AMCG00006778 mRNA upstream 289594 19697431 ~ 19706930 (+) True AMCG00006778
AMCG00006787 mRNA downstream 16197 20015945 ~ 20047024 (+) True AMCG00006787
AMCG00006791 mRNA downstream 262552 20262300 ~ 20262799 (+) True AMCG00006791
AMCG00006792 mRNA downstream 344653 20344401 ~ 20355364 (+) True AMCG00006792
AMCG00006794 mRNA downstream 531607 20531355 ~ 20535351 (+) True AMCG00006794
AMCG00006793 mRNA downstream 544729 20544477 ~ 20562876 (+) True AMCG00006793
TU139270 other upstream 6953076 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 10429173 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 11272458 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 11819738 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 12341330 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 937749 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 1048588 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 1143117 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 4032365 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 4305031 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile