RNA id: AMCG00006787


Basic Information

Item Value
RNA id AMCG00006787
length 9156
RNA type mRNA
GC content 0.42
exon number 12
gene id AMCG00006787
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20015945 ~ 20047024 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGCCCACGACATCAGTCTGGAGGAATTCGATGATGAGGACTTGTCAGAAATTACAGATGATTGCGGGATTGGACTAAACTATGACTCAGACCCATACGAGAAGGACTGTCTCATCCTGGAGAAGAGCGACCTCCACCACCCGGTGTGCTCCTTCCAAGACGACTTCCAGGAGTTTGAGATGATTGATGACAACGACGATGATgaggatgaagaggaggaagaggcgGACCCCGAGGCACCTCCCTCCCCTTCTGCTTCCCCTCCTTCCTCCCCATCCCTGGGCACCCTACACAAGAGCCGCCCGACCACACTGAACCTCACCACCACAGTCTCGCAGGATTCTTTGAATAACAATGGGAGTTTTTCTCCACGAAAAGCCAGCTGGCAGGAATCTCTTCATCACCCCTCTTCAAATGgACGCTTGTCTCCATCCCATTCTTGCCTTGAAGATGGTAGCCATGTCAATGGCCAGTGTGCTGCAGCACCAGGCTCTGGGTCACAAAGCAAAGGTACAACCCCAAAACAGTCAGGGGACACTGAGCAGTCACAGTCACCACTCAGGCCCCTCCTGTACGACTTTGAGGGCAACAGACGGGAAACGATGGAATACGGGTCTTTTGGTCAACATAAAATGTCCACAAGCTCAGATGCTGGAGTGGATCCCAGTGCTGAAGGTGCCAGTCCAGGCATAACCATACCAGTGATAGATGAAGTCTCTCAGAGCTCTGATACTGAAGTTGACCATGACCTTACCAGTGACTATGCCAAACAGTGGGGGTGCCAATCTAGAACGGCCAATGATACTTACACGGTCACCTCCAAGTCAGTGGTCGATCCAGATTTAGAGAATGACATAACTTTAGATGGCACGAGTAAGTGCTTATCTTCTATTGCACCAGCAGGTAATGATGCTGGAACTCCCTTATCAGATGAAGAACTAGAAAAAGACTTTGACGTTGACTTTATGTGTAAAGACAGCTACGAGTTGGACTCCAAAGAAACTGGGAGCTCCTCTTACATTGAGTTCCCTCCAATCGAGCCCACCTCTTTCTCTAGTTACATGTCCTCTGCCCATCCATCAGAAGCTGATTTAGATGTATCCCATAGTAACCATATCGCAGGTCCACGTGGTCATCCGTCCTCTTCTTCCAATGATACAAACTCGCCATCCTCGGACCCAGGCATTGAAGCTGACCTCACCAGTAAGAGCTGTAAAAGGTACTTGCTACCCGGTCATAACATAGACGAGCTGAGTTCTCCCGGCTCCGATTCAGACATTGAGGGAGAGCTAGAGGCGGCATTTGCCTGTGGAGGGCCCTTAGTCAGCAACATGATCTCATCCATCTCGGAGACAGAGCTAGACCTCACGAGCGATAGCAGCAGTGGCCGGTCCTCGCACCTCACCAACTCTATCGAAGAAGCCAGCTCTCCCACATCGGATCAGGAGCTGGACACGGAGTTAGAGGCAGAAAGTGGGATCATTGGTATCAAGACCTCCCTCCTTCTTGGGCAGCCTGATCTCAATAAGGTTACTTCACCGACAATTGAAGCTGAGGTCCTAACGCGGTTTGATGACAGTCAGGCATTGATGGGTCTACAGAATGTTGATGATCTTGTTTATGAACACACTGCGGACCCGGATGAAACGCTCCCTCCGGCCAACCAAAGCGAAGATAGCCTCTCGAGACACTTAGTCCTGAAGATTGAACCTGACCATAGCTTAGAGAGTTTCAAGAGGTCCTTTTACCTGCCCATAGGACCAAAACTCATGCCTGAGGTAGACGATTACGAAGGGAACAGTGAGTATGACTCGGAATCAGAGTCGGAAGCAGATTTGAGCGAAGACTCTGATTCCCCCTGGCTATTGAGTAACCTTGTCAATAAAATGATTTCAGAGGGTTCTTATCCCATCAGCTGCCCAGAGGACTGCTTCAAAAGGTCTGGCTCCATTTCTGACACGATTTCACCCACGTCAGATTTGGAGACAGATGCTTTTAATGAGCCTTTAGACAGCCAATCCCAAAAGCTGAAATCAAATGGTGACACGCAGGTGGAAAGCTTTGACAAAGGCTacttaaataatgaaatgacaaAAGAGCAGGGTTCGAGTAGGGAAGCAGAAAGCTTTGAGGGCTCTTGTGACCCAAGAAGCACAGCCAAAGACAAGAACAGCTCTGAATGTAAACTGACTTCAGCTGAGACCAATGAAATTGTAGGCCCGTGTCTGTATATGAGTAATCCCACCTGTGACACAATCACTCCAGTCTTTGTGGATCGATATAATGGCAGCGTCAGTGCGCTCAAAGCAACAAGCCAAGGAACCTATCTTCCTATCTTAACCTTTGATAAAGACATTGACAGCTCTTCTGTTGCTAAGTCGTCTAAAAACCTCAAAGAAGAAATATTAGAGCCCGATAATGATTTATCCGCCGGAGCCAATGAGCCTGTGTCTCCGTGTCTTAGTGAGAACTTGGAGAGTGATAAAGATGAAGGCCGCGAACTCAAGGAGGACACAAGCTCTTTGGACCGCATTAAGGAGGCTAAAAACAGCCTGACACTAGATCTTACCACAGCTCAGACTAACCGGTGCTTCAATCTGACCTATTCCACTGATAACGATGAGGAATCCTTTCTGGAGGGCATCAAGAGATCTCCATACAACGATCAGTACTTGGATGATTCTCCTACTTCTGAAGAGAACGGGGAAGACCTGCCACCTTTAAACCCTGTGGCAACCAAGCAGATGGATGAGTCCCTGGTCTATGACTCCATTAAGTACACCTTGGTGGTTGATGAGAACACCACTCTAGAGCTGGTCAGCTTGAAGAGATGCACCTCCATCCTGAGCGACGACAGTGAGATCTCTACCCTCTGCGACAACTGCGACCTCGAGGTGGATGATGAGTTTGGCGTCGACGGCGTGGGAGCAGAGATCCTCAGCTCCTCTGAAGACTCGTCCCCTGAAGCAGACGTGCCGTTCTCCAAGAAGTTCTTGAATGTCTTTGTGAACAGTACTTCCAGGTCATCAAGTACAGAGTCCTTTGGCCTTTTCTCGTGTACAATAAACGGAGAAGAAAGAGACCAGACACATAGAGCTGTGTTCAGATTCATCCCACGGCATGAAGATGAACTGGAGTTGGATGTGGACGACCCTTTGTTTGTAGAGGTGGAAGAGGATGACTACTGGTACAGGGGATACAATATGCgcacaggagagagaggcatTTTCCCTGCTTATTATGCCCATGAAGTAGTGGGCCAAGTCAAAGAATTTGTCGGGGTCAAGCGGGACACAGCTTGGATGGAGAGATTCAACGTTCAGTTCTTGGGCTCAGTGGAAGTACCTTATCATCAGGGCAACGGGATACTATGTGCTGCCATGCAGAAAATCGCAACTACACGGAAACAGACCGTCCATCTCAGACCTCCCGCCATCTGTGACCTGGAAATCAGCCTGCAGGGCGTCAAGCTCGTCATGAGCCTGGATGAGTTTGACGGCAATGATGAGttcgACAGGTGCAGTCACTTCTTCCAGATGAAGAACATTTCCTTCTGTGGCTGTCATCCTAAAAACAACTGCTACTTTGGATTCATCACGAAACATCCAGTGCTTAACCGGTTTGCCTGCCATGTCTTCGTATCCCAGGAGTCAATGCGGCGCGTAGCAGAGTGTGTGGGACGTGCATTCCAGGAGTATTACCAGGAGCATTTGGAGTACGCCTGTCCTACAGAAGACATTTACCTGGAGTAACCATACCCAATAACAACAACCTCCCCCTGACTCTGTATGTTCTTCAAGAATCCCACAAGGGGGCTTTCAGTAGCTGTTCTCTTTTGTAAGATACCTTCTTTCTGAACTgggatgcttttttttcttcttcttcttcttgttccTCTACCTTTTAGACATCTTCAGATCGAATGTGCATTGATTTCAAATTTCCCCCTCCTTTTTCTACAAGTTAGCGGGTACATGGGGTGGCTGAGGAACAGTGCttttgaagatattttttttcttcaatttaaagatgaacaaaacaaaactacaactACTTCTGTACATGTTTGACATTCATGCATGGCTTTAaggtgatacacacacacacacactcgcatacacacgcacacacctaCGCTGAAAATACAAGTATGATAGTATTCAGGGGCTAGAATACCCTTGATAAATGCAGTAGATAAACACATGATTTTGCAGCTGGTTGATCTTTGAGCCTTGAGTTGTAAATATGAATGAACTCAAAAGCTAAGCTAACTAGATTTCCACTGAGATAGTTGGTGCACCTGACTGTGCCAGTATGTGCAAATTGGAAATTAAGTCCTTAATTATAGGAATCGCTGGAGAAGAGGCACCATAAAAACAACAGCCAGTGTTCCATATGAAGcatagtgtaaatatatatatagacagagtAGAAAATAGAGACAGCTCATAAATCCATGAAATGTAAATTCACATTTACACTAACTGTCACACGGTCATGAGAGTTGATTTGGTGTCATTGTCTTTATTAAATGGCAGTACACCTGTCAGTGGCATAAGGGAGACATTTACGAAGGTCCAGTGAGAAGAAAGGAATGGAAATGACAGGCAAACATCACATTATCTGAGGTACAACTACCTAGTCTGAAAAGGCACAGAGCTTGTAAATATAAATGCGCTGATGCTTACCTCTTCTTGGCATCATTAAACTGATGTTATGGAGTCGCTGACAGATGGTTTCCATACATTGATCAGGATTATCCGAACCCAGTGGTGTAGCTACTGACAGTCTATCCTACACTGCGTCCTGGTTGAGCCTGTTTCTGCAATTTGAAAGAGGAGTGCAGTTATGCCATGGGGgtgagagggtgtgtgtgtatctataggACACTGATGTGTTCTTTTCTATCAGTGCTCTTTTCTATCAAGGAATATCGGTTTGGACGATGGAAGTGGACCTTGGTTTTTGTAAGCTTTGCCGAAAGGCTCAGGAAACGTATCCACTATACATGGTCCCTCTGTCGTTTCTTCTGTTCATCTCGCTGTGTGACTCTTTGTGTCTGTGCTAGCTGgatgttttccatttctgtgTGTAGCCAagtaaaagagagagaaaagaaatgcagttgGCCCCCCGATGAGTATTTCTTTGGCGTATAGATACTGTGTGTTGTAGCATAACAGTGATTGGAATGTGATAAGGTATGATCAGAAACTCTTCCTTCATGCGCATTACAGAAATCTCTCTAAACCTTTTTGAATAGGAGACTGTACCGCTgccagtttttctttcttttctgacAATTGTTCTACCACATTCCCTCCATCCATATTCATAGAAAAGACTGGTCTTCTCTGAAGAAGCTGAGATGCTTTAACACAAAGctgaatgaagaaagaaagaccTTTGTCTAATGCTGTATAATTTCATATTTGGGTCGTACTGGGGAATTAGTGTTGTTGCTTTGCGCCGGTCACGGCTCGGTTATTTCTGACTAACCTGAGGCAGTAATAAGCTGGTGACAACAGGAAATCTGCATGACTTTTCACATCAACAGCCTGCTAGCAAAATTGTCTTGCCTGTAGGAATACAAGAAAATGTTACTCGTATGCTTCTGTTCATTTACTGTGGGTTTCTTTAATGAACAACATAATAAACTGATGTAGTTTACCATACGTCtgtacttttataatatattacaaccgttatgtaatattttagcCTTTAAAGTTCTGTGGATATCTTTAGTGGAGATGTACAAATGCTTCTTGGTGTTTTACAGAACAATATTTAAACCATAGGTATGATAgatcaaaacaaccaaaattgtagcaaattagttaaaataaaaataaagataacatGCAAAAAGATAACAAGATACCCCCctccataaaataaaagatatataACCTTGATTAAAAAGTCTTAGGTATTGCTGACTCTACGTTTACCTTCATATCACCGACTTTCACACAGAAGGTGAAATGGAATTCTATACTGATATATAGAAGTAGAAACATAGATATCGAGTTTCTATGCCTTTCACCGCAGTGTTTCATAATATGTGAGcgttcctcctcctcatctctctctctctacctgccCAGATGGGTTGTCCCTGGGGGGTTTGTGACCTCACCACTCTTGCTTTAGACTCGGCACTAAGACTCTCCTCTACCCTCTGCAAGGCCACAGTGTCTCGGCAAAAGAGGGGACCCCAGACCAAACCAACCAGAGTGTAAATGGACACAGCAGGCAGACATGTTTTGTATGACAGACGTGTATTGTGAAAGAATAGGCCTCCTTAAATCAATATtcctgattgattgattgatatatatgtatgagaGAAACAGATGCACATACTTTTGTTagtgtttcgtttttttttctcagactATCACATTTGTCATTTGATACCATATTCCTATATACTCATGGCTTTACAGAATTGTGACTGAATTTCTGAACTAGAGCATACACTAGAAATGGCACTTTGATTTTTGCTTATACAGATATAAAGATCTAAAGATCATTGGAATTGACTGGTCAGGGGTCAGGGACTGCCCTGTTCATTCAAAGCCCGATTCTTGTCAATGGTATAGTCACTGTGCTGTCAGAAGGAATTAGGCCTTATGTTAAGAGtactttaaatgaatgaaaataaatacatcaaaagcAGGGCCTCCTGACCTAACAGCTGGGAGTTTTCCTCTGTGAGGGTTTTTCTCCTCTCTGTGGTAGCTCAGCTGTCACATGATGATTGCCTCATCATAAGACTTGACTTCACACATCCCATAGTGCAGCATCCAGTCTGCATGCAGCTCAACCTCATCTGGAGTGTCACATGTCCTGAGCTACACACCTGCTTGTGATAATTGTGGCACAGTTAAATATGCAGGATTTATGCAGTCGCCACGTCCTGCCCTGTGGAACCTCAGGCTTCAGTCTTTAAAAGAATGCATGCCCTTCCTTGGGAATGACAAGATTTcattgcatgttatttttttgtttctcacatTTATGAAATCGTAACATAATATACGGTGCCTTTTGTCTTCAGTTGCTTCTGGTCTTGAGTGTCTGTCATGCAGGAGTTCACCGTGAGAGAGAATTAGTGTGTGCCAGAGGAATCTCATTATGGTTAATtgggtgttttgtttaattttgatgtatttacttttattttattttttcattgctttgtattatttattaatttgtattttaatagctAAAGGTCATTCTGAGGTATGTACTatatggagtttttttttttttttagttttttttagcaGTATCAGTTTCAGAATGTGAATGAAGAAATGTCTATTTAAATTTGCAGTATAAATAGGATTAATATGTCTCCTTTGTACACtctttaaaagtacatttcGCTTTCCAGTTATGCCTGCAGCAAGAAacaaaagattaattaattcactagtcacaacaacaataataataaaaaagtgtttctgTAATTTGTTTCCTGTGCACAAAAGAGTTCTGGAAATAATACTTTTCCATGcttgttttacataaatacttgcatataattaacttaaaaacaacTCTACATTGAGTATgtaacacagaaaacataagTCATTTGTAATGGTAACCATATCTTCTAATTGAATACATGTAAGGCCTATGCAATAGTTTGATGTAGACAAAATGTTTGGTGAGGAATTATAATGTGGTACAAGTCTGCGCCTGTAGGCCCGGAGAGGGAACATTTTACAAGATATCAAGCTAATGGTTAATACTGTTTTTTCCTGAATTTATAGTCATTTTAAAGTGCGCTTGTTGGACATGTACCATAATCCTCCATCCACAAGGAACTCATATAATCCTGCATGAGTCATgattactgtatttgttataaGCTTTCCTTTTATGTAACATCTCTCCTTTACATTTACCAAAACATGCTTGTAGGTTCATGGGAAGGGCCAACCGAACTATGACGAAACGTAAGACTTTATACATGAACCGACAGTCGGTGAACACCACgcaaatattgcttttttattccTCATCTCAGTGTCACATGAGCCAGGATTATGTGGACTTGCAGTCGTTTGGCAAAGTCCCCGACGCCCGTGCTAGGGCTTTTGAAGGGAATACAGTATTTGTAGTCACAACATAGACAATGTGGAGACATTTACAGACTCCGAGGAACCCTTCAAATTAGAGAAATAAAGGAAATCGCCTCCTTCCTTCAAGATGTTCATTTTTAAGAGTTTCCATGGTAACCAATAGTAGTGAGTGGAAGTTAGTTGTGACTGGAAtattaatggattttaaaaaaagaGGTTCAAAGGAAATCACTTCGTATATGTTGTTTGCTAGATCACTGTACATCTAGTATAACTCATGCTGTGTAGTTTGTTATGCTAcgttaataaaataactgtgaaataaaaacaatcttcaaTTTTTCAGATGTATCAAAATCTTATTGGACAAAGCTATACTGACACTTCTGTTTCTCATATATGAGTTATGTatcaatttatttcagttctgcACACAGACGGTGTTTATTAAGGTGTTGATTATCAGCTGTCTTTATCATCTTCTTCATGTCTCACCATGTGATATGCAAGATGCATTTTGCACGGGCACTGACACTCACGTtgtgcagcagtgtgtgcaAACATGTCTCTTTTTTCGTGCAATATTAGGATTGTGTGGCAAGAGACATGAATGTAACATCTCAAGAATTTGTGTGTCAACGAATGTGATTTATCCAGCTCCAGGGTAGTACACATCTATTGTAGAGCTGCGTAGAAACAACCTGTATTTAAATAAGAACTTGTACAGCATTTGCTTTCATGACAATAAAAATCCTATTGCATATTGCTAGTGTATTCCATTCAAACGATTCCCTTTGCTTTGTACTCCCGTCAACATGACCAATCTCTCATTTTGATGCAAGAGATTTTTcggcattttaaaaatctaacaGCTACTTCCCTTTGCCCGTTCCCTTTCTGGTAGACACCCAGACTCCAGGATTAATTTAGCCTGTATAATCCATAACGGTGTAACTTTGGAATTAAACTGAGATTCTTCACTGTACAACTATAACACATCAGTATGTAATAAACAATATCTATCttgtatcttaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K04435 MAPK8IP2, JIP2; mitogen-activated protein kinase 8 interacting protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140733 lncRNA upstream 32649 19983005 ~ 19983296 (+) True G112380
TU140697 lncRNA upstream 74970 19940493 ~ 19940975 (+) True G112350
TU140640 lncRNA upstream 369989 19643651 ~ 19645956 (+) True G112305
TU140636 lncRNA upstream 380721 19633239 ~ 19635224 (+) True G112302
TU140622 lncRNA upstream 387781 19626813 ~ 19628164 (+) True G112295
TU140780 lncRNA downstream 228969 20275993 ~ 20276232 (+) True G112424
TU140786 lncRNA downstream 490919 20537943 ~ 20538220 (+) True G112430
TU140791 lncRNA downstream 516033 20563057 ~ 20563275 (+) True G112435
TU140792 lncRNA downstream 516474 20563498 ~ 20563788 (+) True G112436
TU140795 lncRNA downstream 518502 20565526 ~ 20571427 (+) True G112438
AMCG00006786 mRNA upstream 16197 19996524 ~ 19999748 (+) True AMCG00006786
AMCG00006782 mRNA upstream 44547 19966029 ~ 19971398 (+) True AMCG00006782
AMCG00006784 mRNA upstream 60106 19949141 ~ 19955839 (+) True AMCG00006784
AMCG00006781 mRNA upstream 82749 19884722 ~ 19933196 (+) True AMCG00006781
AMCG00006783 mRNA upstream 141356 19872006 ~ 19874589 (+) True AMCG00006783
AMCG00006791 mRNA downstream 215276 20262300 ~ 20262799 (+) True AMCG00006791
AMCG00006792 mRNA downstream 297377 20344401 ~ 20355364 (+) True AMCG00006792
AMCG00006794 mRNA downstream 484331 20531355 ~ 20535351 (+) True AMCG00006794
AMCG00006793 mRNA downstream 497453 20544477 ~ 20562876 (+) True AMCG00006793
AMCG00006797 mRNA downstream 573718 20620742 ~ 20628623 (+) True AMCG00006797
TU139270 other upstream 6972497 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 10448594 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 11291879 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 11839159 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 12360751 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 890473 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 1001312 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 1095841 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 3985089 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 4257755 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile