RNA id: AMCG00006789


Basic Information

Item Value
RNA id AMCG00006789
length 6059
RNA type mRNA
GC content 0.41
exon number 15
gene id AMCG00006789
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19986747 ~ 19999501 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGATTCTATATTTTGGCTTTCAACCCTACATGTAAATGTCCTCTTTTGGGGCCGTTTACTTTTCTCTCAGATGCACCCAACTGGATATCCTAAGGTTCGTCCATGGTCTGAGTTATTGAACTCAATGGAAAGACATACATTTCACATCATTAGATTCACTAGTAAGAAGAGTTCCAGAGTCAGGGATCCATTTAAAGAGGAAATCAAAAAGATGTTTCCATCaatttattaacaacaacacagaagataatgtaattatgtactgtacatgtaatGTGACCTAACTTGTGTTCATATTCAGAATTTTTTATCCGCTAGTAAAAGATCCATATAAGCTCCAACAAGAAGGTCCTCCTTTTTCACGCCCAGCTCTTCCATTAATTTGTGAGTGATGTCTTCACCTTCCTCTGCACTCTGACCATCTTTAAGCACCACCTGCAGTTCCATGAAGTGACCCAGGCCCTCAACTGTGTCCACATGGACCCTGGTCTGTCCAACCATGTACAGGTGTCGCTCTTTTTTCACTGTTCCCTTGACCCCCAAGGAAGCAGAAAGAACTTCCtgCAAGTCCATCTGGATCATTCGTGAGAGAGATGGAGTAATTTGAGAGCTTTGGTCCGTCCACATCTGGCCTGTCATAGAATATTAACTGGCCACTCCCATTCATTAAATTCCTAAGCTTCAGACGACCCTTTTGCACATTAAAAAAGGTGTCTTGTTGCAAAATGATTGTTCCTTCCGATTGGCTGAGCTGTTTGGCCTTCCGAGTCAGAATCTGAATGTCGTGAACCGCAGCTTTGATCTCCACATTGGACGGCATTCCTGCAACAGTTAAGTCCCGCTACTCCTATAGCAGGCGCCTCTGCTCCCCTGCACAACGACAACATCCGCCGTACACAACACATGGGCAGCGCGCCATGCCGTACTTACATCTCCTCCCCCAGGCAAATGCAGTGTTTAAATACGCCATTTGGGGACGCAATCAGATAACTACACATAAAgccattttactttaaatatagaCTGTATTATAAAGCTTATTTCTGTGAAGATGCAATCGTGTCTGACTCTCCTGCATTACGATGATTACGAAGAACACATCTgaccggtgtgtgtgtgtggctggtTTGAGCTTTGGCGCTGATAACAAATTGAAATTTTAATAAATGAGAATAGTTATGAAGATCGTGAGTCATGTTTTAACCTGTACTGTGATGGATTTGGGATGTAGCGAAAGGTGCGCCACATGATACAGAGTTCCGGAGACGCCCACTTTCACAGAACCGTTTTGATGGCGGATCGGCCGCTTGTGCCTCCGCGCCTGCGCTGTGAGGCAGACGAGACGCTGCAGCGCTCAAGAGGGACGAGTTCAGCGCCATTAAACCACTGCCGCCCCCTAGCGCAGCGGAGGCGAACGACACTGCGCCGGGGAGAAAGGCGTGGCTCGGCGGCTGCGTGTGACGTCAGGGGAAGCGCCGCAGCTCGGAGGTCGGGATAAACGCGGATGCCGGGCGACAGCGCTGTGGGATCCGCAGCAACAGTGCCAGCAGGACGGGACGTGTGTCAAGCCATACCTTCATATTAAACACGACTGCAGTCTAGCTTTCAATGCATGTGGTCGTGTTTTTCATGGTCCGGTCCCTTCCCCACTGATGCTCCACACACTGGTCCGTGCTGGACACCGCGTTGGTAAATCTAGTTTCTCGCTGATTACTATCGATCCGTCTGCACCGAGGAGGTGCGTGAAAATAATGCAGTCGGGGGATCATCTGCACGGACGTCCTTGCGCGCTTTCCACGTCTAACGGGGTGAACGGGGCGTCGAAATCGCCGGGCGCGGATGCCAGGCTGCTCGGCCACCCCGGGGCTCCTGTGCGCTGTGAGCCGGGCAGGGTGCCCAGCCCCTGCTGCGGGAATGGGGAGGACGACTCGGAAGCGGAGTCTTACCGGGATGGGCGCACCGAGGAGGTGGATAAAGACACCAAGGTGAGGGCGTACGCCTGGTGCCAAGCCTTTCTGTCCGGAGCATGGAAACGCATTACCGAAGAAGAGTTTCAGATCGGCGTTATCAGTGGTGGACTCAGTAACCTACTGTACCTTTGCTCTCTGCCTGACCATGTGGACAGTGTTGGACAAGAGCCCCGCCAAGTGCTGCTTAGGATTTATGGAGCCATTTTACAGggtgtggATTCCCTCGTGCTGGAGAGCGTGATGTTCGCAATACTGGCCGAGCGAGAACTGGGCCCCCGACTCCATGGCATCTTCCCTGAGGGTCGACTGGAGCAGTACCTTCCGAGTAACCGGTTGCGAACGGAGCAGCTGCGCATTCCTGACATCTCTGCGGAGATCGCCGTGAAGATGTCTCGTTTCCACGGGATGCTCATGCCCTTTAACAAGGAGCCCAAGTGGCTGTTCGGGACCATTGAAAGGTACATGAACCAGATTTTGAAACTGAAGTTCACCAGAGAGGCCCATGTGAAAAAATTCAAGAAGCTGATGAAGTACAACCTGCCGGCAGAGATGGAGAGTCTCAGGACACTTCTAGAATCGACTCCTTCTCCTGTGGTTTTCTGTCACAATGACGTGCAAGAAGGCAACATTCTCATGTTGGATAATAGAGACCCCTCTTCTACAGACAAGCTGATGCTCATCGATTTTGAATACAGCAGCTATAATTACAGGGGTTTTGACATTGGGAATCATTTCTGTGAGTGGGTCTATGACTACACCCATAACCAGTGGCCCTTTTTCAAAGCCAATCTGGAAAACTTCCCCAACAAGCAACAACAGCTACACTTCATTCGACATTACTTGGCCGAGCACAATGGAAATGCTTCTCAGGAAGACCAGGCACAAACTGAAGAACATATAATCATCGAAGCCAACCGatTTGCGTTGGCATCTCACTTCTTGTGGGGATTGTGGTCCATTATACAAGCTAAATTATCGACGATAGAGTTTGGGTACATGGATTATGCGCAGTGTCGATTTGATGCGTACTTCAAGCAAAAAAAGCAATTTGAGTAACACTCAGTTTCAATGGAAACCTTCAGCACAAAACGAAAAATTAACGTATCATACAAAAAGGATCTCTCATTCTGTATTTCGAAGCTGCAGATTTGTTTCTCGGTATTTAAGCATCCGTCCAAAGATGATGAACAGTGAAAAATTcaaaaagtgcttgaatttatAAAGcttgagtttaaaaaaaaaaaaaattagcctatgttgaaaaataataaattacaacataaataataaaatgaacgAAAAGACTGTACTCTAAGACAAGTAACATCAATGACAGTTATTCACCAAGAAGTATGAGATGTACAATCATCAGTTGAAATCTTTCAAAATACTGTGATCTTGTAAATAGCATCTCAAACGTTATGTCTTCAGCTTATGACTGAAAAGAGGCAGGCAAGAgaaggaacattttatttttactacagTAAATAACTACATTTTGCGTCCTTCATATCATGTTAACAACAAAAGCACTTATGTACTTCATACAaatattcttgtttttgtttattgtattctgtattgtgTATAGTTTACATTTATGCGCATCATTTTCCTGTTTCTCATCCTTTTTCATTGCTGGTTATGGATACAATATTTCTTGCAGCTAGTACAGCATATACCACATTTCTGAATACCTCATGGAATGTATTGTGCGCTGTTTttgaacaaattaatttccaCATAGATTTCATATACAGTTCACAATAAGGGTCCAACATGTAATTCCATATTCTATATGGTTTTACTATTCTCTTTagagtttttttgtgtgtgtctgtttctgagctcaatatttagtattttttacaTATGCAGTTATCATAGGAATGTGACTTTAACTAGATTAACAGTGAGTGTTGTTTCAAACACACTGAATGTATAAGAACACCTGCAGCCTGTAGTTTCTTATGGAGAGGTTTCTATCAGCAATATATGTTGTTAAGGACAAGGAAAAAGTTCAACTCTTCTAGCTAATCTCTTGGTCAGGAAGAATCTTCAAATGTTCTCCCAGTATGGTTGTAAAATGGGCATTTgggcttttgttttaatgattttaatagtttttctttgatcaaatatttggtGTCTGATGTTAGCATGTATTTGTGACATCAAAATGCTGCTACTACAATACGGTGCATGTAAggatgatttaaaacaaattttatGACAAACGGATTTCTTTAATCACGTCCATGCGATGTCAGCATCAAAGTACACCCATGCCTTAAGCgacaatatattgtatacatttcttaaaacatgGCTGAGTTCTTGATGAactttctgtctgtctgactgtaaaagaaaattaattgcaATCCTCTTGAGcttattatttgttcatttgaaaCGGATATAATTGTATAGTTACTAAACAATGTAATTGGATCTGAATAGGATATGTCAGAAATACAATGGTGACTAAAAAGCTAAAAACGCAGAGAAAGGTTAACTCCAAGCAGTCGATAAACAAGCCAAGtaacttgttttttaaattagtttaattgaaatctaatttgtaattacaattaattaatattgtaattgtaCTACATTTTGGTTGTATGGGCACGTGGCTGAGACATTcaagaaacaaagtaaaactAATCACAAGAGGctgtgatttatgtatttatttatatgttttcacttttgtttttgactCTGTACATCACTTTCAAGGTTCAAATCATTTCTTTAAACTATAATGTTGTCATGTTATTGTTTCACCCAGTGATTTAGGTTTTTGTCAGCCTCACCAATTGAATCCATTGAATCCAAGCGACTATCCAATTGTGGTAAATAACTATgggtctaaatatatatattgttgtgtgtctgacctttggaaaatgttttttaaaaagatttgcATCCTAGAAAGTGAGTTTCCTGAGAAACATTTTGCAAGGATAAGGTAATGACAACTTAAGTTTTTACTAGGATTCAGCTCTAGTACTTTGCCCGGACTTTCTGGTTTTGGGTACAATTGTCCCTGTACTGGTCTGCTAAAGAACAGTAAATTCCCTGATTTCATCAAAAATCAtaacatttctgcttttttatgttGGTGATCATATTTCTATAGAAAGTGGTCATTCTATGGTAGATAGTTTCCAAACCTGCATCCCTCACATATTGCAAAGACAGGAAGAGAATCTGGGCatcacatttaaattagataATTTAAACTTATCTTTTCAATAAGTGCTGCCAGGCTGGGCACAGGACGCAAACCCCACTGTGTGCATATGGGCTGTCCACCACCGGCCCCTTCTGTTCCAGGAATGGGCTGTGCTCTTAGGGACAGGATTGCTGATCTCTACTACTTACAGGCTTTCCAATGCATTTGCCCATCAGTTTTCTTCTCTGCTATGCCATATTTATTGGGatagtgttattattaaattattaaattacttattttattccTCATTACTTAATGGAAACAATGCATACATTCCTGAATTAACCGCATAGTCCAAGAAAACAActgtttgaaatgcattcagATACTTGGTTTTACCAATTGAAAGCACATGCTTACAAAAACATCCACATTGAAACCTCAAAATGAAGATTTACTGACATGGCtactttttcttccttttctggATTTAAACCTATCAGCTTTACTAAAATTGTTGTTGCAAGACAAATACTATTTTCATCATATTGTATTCATCACCtgttcatattttgaaatcacAAATTCTATGAAGGATTTTTTTCCATAAAGATGCACTCATTGTAGTAATTGTATTAGGATTGGTCTGCAAGAGAAGGTATCCAGAGCCAACCGCAGGCATTCAAGTTTCAACAGCAACATTTCTTTACATCTGGAAAGGAAATACATAGACAATCACTAACTATTTAGTTTACAGACTTGTGTAAAGAcagattattttgtaattgcatGTTCAACTTCAGTCTTGACTTACAGAAATTAATCTGAATGCAACTGAAATATTCAATCAGTTTACTTTACTGTtcaggatttgtttgttttttgcactgCTACAC

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG:

id description
K14156 CHK; choline/ethanolamine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140629 lncRNA downstream 354852 19623221 ~ 19631895 (-) False AMCG00006773
TU140630 lncRNA downstream 354852 19623221 ~ 19631895 (-) False AMCG00006773
TU140619 lncRNA downstream 417075 19568517 ~ 19569672 (-) True G112292
TU140617 lncRNA downstream 420732 19564956 ~ 19566015 (-) True G112290
TU140616 lncRNA downstream 444779 19541103 ~ 19541968 (-) True G112289
TU140765 lncRNA upstream 79390 20078891 ~ 20079411 (-) True G112410
TU140855 lncRNA upstream 647819 20647320 ~ 20649616 (-) False AMCG00006807
TU140857 lncRNA upstream 651540 20651041 ~ 20652840 (-) True AMCG00006807
TU140858 lncRNA upstream 651540 20651041 ~ 20653659 (-) False AMCG00006807
TU140871 lncRNA upstream 714582 20714083 ~ 20756786 (-) True G112496
AMCG00006788 mRNA downstream 2310 19982166 ~ 19984437 (-) True AMCG00006788
AMCG00006790 mRNA downstream 5312 19971627 ~ 19981435 (-) True AMCG00006790
AMCG00006785 mRNA downstream 39050 19941057 ~ 19947697 (-) True AMCG00006785
AMCG00006780 mRNA downstream 205394 19679601 ~ 19781353 (-) True AMCG00006780
AMCG00006777 mRNA downstream 339857 19643618 ~ 19646890 (-) True AMCG00006777
AMCG00006795 mRNA upstream 48440 20047941 ~ 20053808 (-) True AMCG00006795
AMCG00006796 mRNA upstream 575296 20574797 ~ 20578476 (-) True AMCG00006796
AMCG00006799 mRNA upstream 612869 20612370 ~ 20617950 (-) True AMCG00006799
AMCG00006800 mRNA upstream 628031 20627532 ~ 20637604 (-) True AMCG00006800
AMCG00006807 mRNA upstream 648373 20647874 ~ 20652624 (-) False AMCG00006807
TU140642 other downstream 350822 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 1645537 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 2353302 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 4233512 15752821 ~ 15753235 (-) True G111767
TU139786 other downstream 5232777 14725651 ~ 14753970 (-) False G111621
TU140776 other upstream 236355 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 854556 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 3404674 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 6500514 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 7403099 27402600 ~ 27527348 (-) True G113645

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00025223 False 2991 mRNA 0.40 11 NC_007129.7 8320165 ~ 8338946 (+)