RNA id: AMCG00006795


Basic Information

Item Value
RNA id AMCG00006795
length 2756
RNA type mRNA
GC content 0.47
exon number 8
gene id AMCG00006795
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20047941 ~ 20053808 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGATACAAGTGCTCAGGTGACCGCTGCTGTGTCATATGACGTGCTatcattttaaacttaaattgttCTACCTACAGGCGGTAAACTAGTTAACAATCTtgtgttatattaaataaataataacaagaagaaagtatatacattttgatgaaGCTAGATTAATTATTCCTGGACAGCTTTGCCGAAGACAGAAGgatctttgttttaatgatccGCATAGATTTGGTGTAAAGTCACTTCCTTGCGTTTGTCGAGACACACACTTACTGTACGGACATTTCAAGGTGTCAAGATGCGTCTTCATGCAGTTTTGGTATTGTTCTGCCTGGGTCTGTCGCAGAAAGCCTTCTCGGTCTCACCTCCTCCaaacatcatcattattttcgCGGACGATCTGGGTTTTGGCGACTTGGGCTGCTTCGGACATCCGAGCTCCAGGACCCCAAACCTGGACAGATTAGCGGCCGGCGGACTGCGCTTCACTGACTTCTACAGCAGCAGTCCCGTCTGTAGCCCGTCCAGAGCGGCACTGTTAACTGGGCGCTACCAGACCCGCTCTGGAATATACCCGGGAGTTTTATACCCTGGGTCAAGAGGAGGGCTCCCACTCAATGAGACCACCATTGCCGAGATCCTGAAGCCCCTGGGCTATGCCACAGCTATGGTTGGCAAGTGGCACCTGGGCGTAGGACCCAACAGAACCTACCTGCCTATAAACCAGGGTTTTGACCAGTATCTCGGTGTGCCTTACTCCCATGATCAGggccCCTGCCAGAACCTGACCTGCTTTCCTCCAAACATCAAGTGCTTTGGGAAGTGTGACCAGGGCGTGGTGACCGTGCCCCTCTTTCTCAATGACAAAATCCAGCAGCAGCCCGTCCACTTCCCTGATCTGGTGGCATCTTACGACAAGTTTGCAACAGACTTCATCTCATCCTCTGCCAAAGGAAAACGGCCCTTCTTCCTCTACTATGCTTCACATCACACCCACTATCCCCAGTTTGCTGGTAAACAGTCGACGGGCCAGTCCCTGCGAGGGCCCTTTGGAGACGCACTGCTGGAGTTTGATAACACAGTGGGGGCTCTACTGGAAGCTTTGGTAGCCAGTGGCATCCAGAACAACACCTTTATGTTCTTCACCAGTGACAACGGGCCTGAATTGATGCGAATGTCCCGTGGGGGGAATGCCGGGCTGCTGAAGTGTGGGAAAGGCACCACTTATGAAGGGGGGATGAGGGAGCCAGCCATCGCATACTGGCCAGGAAAGATCCAACCAGGAGTGACGCATGAGTTGGCCAGTACGTTGGACGTCCTGCCGACCATTGCGGGACTCACAGGGGCTAAACTCCACGGTGTTCAGCTTGATGGATATGATATGAGCAACATCTTATTCAACAAAGGAATGAGTAAGAGAAACGCAATGTTCTACTACCCTACAGACCCCAGTGAGATGTATAGTGTTTTTGCAGTGCGGCTGGGTAAATATAAGGCCCACTACTATACACAGGGGGCTGGACACAGTGATACAACCCCCGATCATGACTGCCACTTTGATGCCCTTCTGAAGTCTCACGACCCACCTCTGCTCTTTGACCTCGAGTCGGACCCATCTGAGAACTACAACCTGGCGACCGCGAGCCACCCTGAGTACAAGGCGGTGCTGGTGAAGATTCTGGATGCAAAGACCCAATTTGAGAAGACCATGGTGTTCGGGGAATCCCAGGTGGGGAAAGGGTCCGACCCCGCGCTGGAGCCCTGCTGTGACCCGCAGTGCAGCCCCAAACCCACTTGCTGTGTCTGCAGATAGCGAAAACTGAAACCACTTCTAGCAGGGACTGTCCCTTTGCCTGTAAACCAGTCAGCACAATCCCCAGACAAATACTTGAGCTCTTTATATGTccttaacatactgtatattctCTCCAAGCTTTTTTTGCTGCAGTGCTCAATTTATACCACTTTTACCAGTTCAGCAAGAATTCCTGAGCTGTGATTCAGAGAAGCCGGTGTTTTTAGCTCAGTGTGATATAAATGTTGTACCTTTAGATCCTACAGGCTAACCATCAGCAATCAAAAACTTACTTAACACTGCACCGCTTCTTcagaaagataaataattaattttgaattttaacaCAAGCGATTCAATTCTCAGGGGTACACAGCCCATGGGTAATGAACTCACGTCTGTGCTCTAGTTGTAAATATGAGTCCAGACGAGTAATTTGCATTATGCATAAGCCATAATGACATTCTCCTCACTCATTGAGCAAGCCTCCACCTCCGCCCCCGCCCCCTGTATGCGCTCGACAATATGGGGAGAATtggtttacatatttatttatttattatgtttgtaattAATCGGGGTGTGTATTATTTAGTCTAGTTTTGAATCACCACATGCATGAAAGAAGTTgaagcattttatttcaaatgcgATCAAGTCCACTCATGTATGGCTTACTAAGAGTTTGACTCTCACTCCAACCTGATTCTAGtaagcaacattttcaaaaagatgTAGgcctagatcaaatcaaaacttacCTCCGTGCATATCGTACATTAGAAACTTGTACCTTATGactagaaaaatattttaatttgcagtttgcatgcaggtcaacattttgatttggtttgggCATCTCTCTACCTTCTGACTGTAAACGAGCAAGTAAGGCTCAGCCAATTGTAACATATGAGTTGATTGGtgtcatttaatatattataaaacaatttaacaattaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008484 sulfuric ester hydrolase activity molecular_function

KEGG:

id description
K01134 ARSA; arylsulfatase A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140629 lncRNA downstream 416046 19623221 ~ 19631895 (-) False AMCG00006773
TU140630 lncRNA downstream 416046 19623221 ~ 19631895 (-) False AMCG00006773
TU140619 lncRNA downstream 478269 19568517 ~ 19569672 (-) True G112292
TU140617 lncRNA downstream 481926 19564956 ~ 19566015 (-) True G112290
TU140616 lncRNA downstream 505973 19541103 ~ 19541968 (-) True G112289
TU140765 lncRNA upstream 25083 20078891 ~ 20079411 (-) True G112410
TU140855 lncRNA upstream 593512 20647320 ~ 20649616 (-) False AMCG00006807
TU140857 lncRNA upstream 597233 20651041 ~ 20652840 (-) True AMCG00006807
TU140858 lncRNA upstream 597233 20651041 ~ 20653659 (-) False AMCG00006807
TU140871 lncRNA upstream 660275 20714083 ~ 20756786 (-) True G112496
AMCG00006789 mRNA downstream 48440 19986747 ~ 19999501 (-) True AMCG00006789
AMCG00006788 mRNA downstream 63504 19982166 ~ 19984437 (-) True AMCG00006788
AMCG00006790 mRNA downstream 66506 19971627 ~ 19981435 (-) True AMCG00006790
AMCG00006785 mRNA downstream 100244 19941057 ~ 19947697 (-) True AMCG00006785
AMCG00006780 mRNA downstream 266588 19679601 ~ 19781353 (-) True AMCG00006780
AMCG00006796 mRNA upstream 520989 20574797 ~ 20578476 (-) True AMCG00006796
AMCG00006799 mRNA upstream 558562 20612370 ~ 20617950 (-) True AMCG00006799
AMCG00006800 mRNA upstream 573724 20627532 ~ 20637604 (-) True AMCG00006800
AMCG00006807 mRNA upstream 594066 20647874 ~ 20652624 (-) False AMCG00006807
AMCG00006805 mRNA upstream 602445 20656253 ~ 20666945 (-) True AMCG00006805
TU140642 other downstream 412016 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 1706731 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 2414496 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 4294706 15752821 ~ 15753235 (-) True G111767
TU139786 other downstream 5293971 14725651 ~ 14753970 (-) False G111621
TU140776 other upstream 182048 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 800249 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 3350367 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 6446207 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 7348792 27402600 ~ 27527348 (-) True G113645

Expression Profile