RNA id: AMCG00006796


Basic Information

Item Value
RNA id AMCG00006796
length 642
RNA type mRNA
GC content 0.44
exon number 7
gene id AMCG00006796
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20574797 ~ 20578476 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCAGGGACCTGGGGAGTCCCTCTGACCTGGATCAGGAGAAATACGACGCAGACGAGCAGGTGAAGATCATTTGTTTGGGAGACAGCGCCGTGGGGAAATCAAACCGGCCTCAGCAACTGTCGACATATGCACTGACACTTTATAAATACACCACGACGATTGATGGGAAAACGATATTAGTGGacTTTTGGGATACAGCAGGACAGGAGCGGTTTCAGAGCATGCATCCCTCCTATTACCATAAAGCCCATGCCTGTGTCATGGTATTTGATGTTCAGAGAAAGATTACCTACAAAAATCTTGCCAATTGGTATAAAGAATTGAGAGAGTATCGTCCAGAGATCCCCTGTATAGTAGTTGCGAACAAAATAGATGCCGATATGAAGGTGACCCAGAGAAACTTCAGTTTTGCTAAGAAGCAAGGACTTCCACTGTATTATGTGTCTGCTGCTGATGGGACTAACGTGGTGAAGTTGTTCAAAGATGCAATTAAACTGGCGCTGTCTTACAAACAAAACTCAAGTGATTTTATGGATGAAGTCATGCGAGAACTTGAgAATTTTGAACTGGAAAGAAAAGAGGACTCTTCGGATAAAGATGATGACAATTCAAAGGAGGAGAAATCCAAGTCGGCGTGA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07931 RABL2; Rab-like protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140765 lncRNA downstream 495386 20078891 ~ 20079411 (-) True G112410
TU140629 lncRNA downstream 942902 19623221 ~ 19631895 (-) False AMCG00006773
TU140630 lncRNA downstream 942902 19623221 ~ 19631895 (-) False AMCG00006773
TU140619 lncRNA downstream 1005125 19568517 ~ 19569672 (-) True G112292
TU140617 lncRNA downstream 1008782 19564956 ~ 19566015 (-) True G112290
TU140855 lncRNA upstream 68844 20647320 ~ 20649616 (-) False AMCG00006807
TU140857 lncRNA upstream 72565 20651041 ~ 20652840 (-) True AMCG00006807
TU140858 lncRNA upstream 72565 20651041 ~ 20653659 (-) False AMCG00006807
TU140871 lncRNA upstream 135607 20714083 ~ 20756786 (-) True G112496
TU140949 lncRNA upstream 365693 20944169 ~ 20964562 (-) True AMCG00006813
AMCG00006795 mRNA downstream 520989 20047941 ~ 20053808 (-) True AMCG00006795
AMCG00006789 mRNA downstream 575296 19986747 ~ 19999501 (-) True AMCG00006789
AMCG00006788 mRNA downstream 590360 19982166 ~ 19984437 (-) True AMCG00006788
AMCG00006790 mRNA downstream 593362 19971627 ~ 19981435 (-) True AMCG00006790
AMCG00006785 mRNA downstream 627100 19941057 ~ 19947697 (-) True AMCG00006785
AMCG00006799 mRNA upstream 33894 20612370 ~ 20617950 (-) True AMCG00006799
AMCG00006800 mRNA upstream 49056 20627532 ~ 20637604 (-) True AMCG00006800
AMCG00006807 mRNA upstream 69398 20647874 ~ 20652624 (-) False AMCG00006807
AMCG00006805 mRNA upstream 77777 20656253 ~ 20666945 (-) True AMCG00006805
AMCG00006806 mRNA upstream 110916 20689392 ~ 20707958 (-) True AMCG00006806
TU140776 other downstream 338591 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 938872 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 2233587 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 2941352 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 4821562 15752821 ~ 15753235 (-) True G111767
TU140946 other upstream 275581 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 2825699 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 5921539 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 6824124 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 7688786 28267262 ~ 28292598 (-) False G113775

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU212819 True 2122 lncRNA 0.40 8 NC_035914.1 7875052 ~ 7880946 (-)