RNA id: AMCG00006797


Basic Information

Item Value
RNA id AMCG00006797
length 2942
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00006797
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20620742 ~ 20628623 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTGATTCTCGAACTGACTGCTCGCTTGAATAACTAATCTGAGTTCTGCGCTACCGCACCTTCCCTGTCTCGGCACTCATTGGCTctaaaaaatgacaaatcactgaaaacatttcctCTATCCATGACAGCAATATAAAACGACGTGACCAGTTACATTTGGAGATTATGATCATTTAACTCGTTGGATCAAAAGCCAGTGATTCTGAAGCATTGTGATGTCAGCTGCCAGGGGACGGGTGAACTTTGCAGAGCTGATCAAGAAGAAGAGGGATGGAGGCCAGCTGAGTGAGGAGGAGATCTGTATCTTTGTGAGAGCTGTCACAGACAAGACTATCAAGGACAGCCAGATAGGGGCAATGATGATGGCAATATGGCAGAAGGGCATGGTGCCTGCGGAGACGCTGACCCTGACACGGGCGATGATGCAGTCGGGGGAGGTGCTGCAGTGGCCGCAGGAGTGGAAAAGCCTGATCGTGGACAAGCATTCCACGGGGGGCGTGGGGGACAAGATCAGCCTCCCCCTGGCCCCAGCCCTGGCTGCCTGCGGTTGTAAGGTACCTATGATCAGTGGACGAGGCCTAGCCCACACAGGAGGAACTTTGGATAAGCTGGAGTCCCTGCCAGGTTTTAACGTTCATCAGACGTCACAACAGGTGGCAAAAATTATCGAGACAGTTGGCTGCTGTATTGTTGGGCAGACGGAAGAGCTGGTCCCAGCGGATAAGGTGTTGTATGCCTTAAGAGATGTTACTTCCACAGTTGACAGCGTACCCCTCATTACAGGGTCAATTATTTCAAAGAAAGCCGCCGAATCCCTGTCCACTCTGGTGATTGATGTGAAATATGGAAATGCTGCGTTCTGCAAGGATATGAACGCTGCAAGGGAACTGGCCCAGTCCTTGgTGACTGTGGGGAACAATCTGGGCGTGCGCACTGGAGCCGTGCTCAGCAGGATGGACAGTCCCATTGGTCGATGCATTGGGAACTCCCTGGAGGTGATCGAATCCATCGAGTGTTTGAAGGGCCAAGGGCCAGATGACCTGAAGGAGCTTGTCATTTGTCTGGGCGGGTATGTGCTGTGGATGTGTGGGAGGGCAGCAACGCTGGACTCTGGCAAGAAGGACATTGCAAAGACTCTGGAAAACGGAGAGGCCCTTCGGATATTCCAGGCCATGCTGGAGGCCCAGGGAGTCCAGCCTGAAATCGCCACTGCCTTGTGTGTTGGGAACCAAGATTACTTCCAGGTCTTCAGACGAGCTCAGAGCCAAATAGAGCTTAAGGCAGAGGCTGAAGgcaCGGTGGTGGAGATAAATGGCATGCGCTTGGCAGAAGTTTTGCATAAGTTAGGAGCCGGTCGTACACAGCCTGGAGAGCCAATTAATCACAGCATTGGAGCAGAGCTCCTGGTTACTTTGGGGCAACATGTGCAGAAAGGTGACCCCTGGATCAGGGTACACTACGAGACACCGGCTCTGGGAGAAGATATGAGGGCTTACCTGCAAGGTGCACTTATTGTAGGGAACCCAGCCCAAGTGAATGACTCCCCCCTCATCTCCGAATTCATTCTACCAAATTAAAACAGTGGCGTTCAGAAGTCTGAGTAAATAACTAATAACTCAGAGACTGGAATGGAGTTTACATCCTGAATTATTCTTaattttagttgtattttacTCAAACaatgttgtgctttttttagaaatgttatGCTTTTAAACAGAATATATCTTTATCTATATTACTATCTATCTGATTTTAACTCTACTCAACTTGAAACAGCTCTTATATAatgtatgattatatatatatatatatattatttaataatatgcTTTATGTGTTATCTACCTGATGGGAAGGTTAATTCCCTGCAGTGACTTGAACAagctgtgtttaaaatacagtatttgttaaatattaaagacTTGATATGGAGCAAAGTTCAGgattctttgtgtgtttgcattagCCATTCAACATCAGAAGCTTCTTTAATGTTGCCTACACACATTTCCAAGTGACATATTCGTGTTCTTTATATCTTACTCATTTAAAAGTAAGACTCCAATGGTGGTCCAAAACACAACTTGTctgtcaaatgtttaaatacagagtTTGGTTTGAACCCAGTTCAATCCCGTGGaatgtttacagttttctttcagGTAAATCAGTGTTTAGCTAATCCCAAAGAAAGGCTGCTTATGGTGATTTGCTACTCTAAATTACCCAGTAGTTGTatgagtgtggtgtgtgtgttagttcTGCCCTGTGTAGTTGTatgagtgtggtgtgtgtgttagttcTGCCCTGCGttggactggtgtcccatcccgggtgtaccctgccttgtgccctgtgcctATGGGTTTAGGCTCCAGCTCCGCATGACCCTTAACTGGATGAATTGGTTAATGCAAATGGATGGATGATAgaagtatatagtatatatatatatataatatactagGCATATTGACAAGTCCAATTCATTTTTCCTCCATTGCCTGATCATCCCCCAATTGCCATTGTCAAAATGAAGTTAAGGGAAGAAGCAATTAATCTGGCTCTATAGGTATgatgatttccttttttaaattattacatttgttacaCATCCTTATACAGGGCAACTTAAAACTGTTACAAAATATCATTAGTAGCTACCCATTTATAAATCTGAGTTTTAACTGGAGCAATGTAGTTATTTTACTTTGCTCAATTGTACAATAGAGTGTCCATCTAGGATTGAATCAATgaccctgtgctccagagttCAGAGCCCTTagcactactccacactgctgccaacATGTACAGttagatacataaatatttggacagtgccccaagaacaagcaggaactaaagacagctgcagtgcaggcctggcagagcatcagcAGGGaaacaagtattgaaactcacaatttaattca

Function

GO:

id name namespace
GO:0006206 pyrimidine nucleobase metabolic process biological_process
GO:0006213 pyrimidine nucleoside metabolic process biological_process
GO:0016154 pyrimidine-nucleoside phosphorylase activity molecular_function
GO:0004645 1,4-alpha-oligoglucan phosphorylase activity molecular_function

KEGG:

id description
K00758 deoA, TYMP; thymidine phosphorylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140795 lncRNA upstream 49315 20565526 ~ 20571427 (+) True G112438
TU140792 lncRNA upstream 56954 20563498 ~ 20563788 (+) True G112436
TU140791 lncRNA upstream 57467 20563057 ~ 20563275 (+) True G112435
TU140786 lncRNA upstream 82522 20537943 ~ 20538220 (+) True G112430
TU140780 lncRNA upstream 344510 20275993 ~ 20276232 (+) True G112424
TU140827 lncRNA downstream 10073 20638696 ~ 20638986 (+) True G112465
TU140836 lncRNA downstream 18755 20647378 ~ 20725442 (+) False G112470
TU140833 lncRNA downstream 22081 20650704 ~ 20652823 (+) True G112470
TU140886 lncRNA downstream 138913 20767536 ~ 20773066 (+) True G112510
TU140931 lncRNA downstream 290904 20919527 ~ 20923505 (+) True G112535
AMCG00006793 mRNA upstream 57866 20544477 ~ 20562876 (+) True AMCG00006793
AMCG00006794 mRNA upstream 85391 20531355 ~ 20535351 (+) True AMCG00006794
AMCG00006792 mRNA upstream 265378 20344401 ~ 20355364 (+) True AMCG00006792
AMCG00006791 mRNA upstream 357943 20262300 ~ 20262799 (+) True AMCG00006791
AMCG00006787 mRNA upstream 573718 20015945 ~ 20047024 (+) True AMCG00006787
AMCG00006798 mRNA downstream 16606 20645229 ~ 20647241 (+) True AMCG00006798
AMCG00006801 mRNA downstream 38725 20667348 ~ 20674351 (+) True AMCG00006801
AMCG00006804 mRNA downstream 47243 20675866 ~ 20692613 (+) True AMCG00006804
AMCG00006803 mRNA downstream 93180 20721803 ~ 20751442 (+) True AMCG00006803
AMCG00006802 mRNA downstream 131804 20760427 ~ 20767061 (+) True AMCG00006802
TU139270 other upstream 7577294 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 11053391 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 11896676 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 12443956 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 12965548 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 308874 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 419713 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 514242 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 3403490 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 3676156 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile