RNA id: AMCG00006801


Basic Information

Item Value
RNA id AMCG00006801
length 5475
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00006801
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20667348 ~ 20674351 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCACGGACACGTAAGCTGCGCCTCCAGTGCAGGTACAACGATTTCTGGTACTTAACTGtcaagacaaatacaaaaaaaTCTTGTATACTTCAGGGTGCATTTATACATGCACAGTTATGACTCTTAGCTAAATCCAACCACAATGGATAAGTTTGGCATGAGCTTTGGGGGTGGCCCCAGCAAGAAGGAGCTTCTGGACACTATAGATGGTCAAAAGAAACAACTGACCCAGTACCAGACCCGTTTCAAAGATGTTGTCAGAGCTTATAAAAGCCTTTTGAAGGAGAAAGAAGCCTTGGAGGCCAGCTTAAAAGTTCTAACAGTGTCCCAGGTGGCTGACCTGAACTTGCGCAGTGAAGTGACTTCAGGCGCCTGCGGTCTGGAGCGATGCTCTTCGGACCTGGGACTGGGAGAGGACAAGTGCTCCCTACACAGTGAAGACAGCATCGACACGGCGGCCAGCGCGGAGACCGCGACTAGTGTGACAAGCAACAGCACCAAAGAGGAATTGAATGAGGAGGACAGGAATGCAGGGGAACAAGGGGCCGGCGTCTCCTCCTCCCAGAGGTCTGAGGAGGCCAATGGCTCTGAGAGTGGCATCAGCTCCAGCAGCAGTGGTGAGCAGCAGGCGGCGGGAGAGGCCGACAGGAGGGTCCTGCAGCTGAAGACGCAGCTGTCCACCCTGACCAGCTCCTTGGCCACCGTGACGCAGGAGAAGTCGAGGATGGAGGCCTCCTTCCAGGCAGACAAGAAGAAGATGAAGCAAGACTGGGATGACCTGTGCCAGCaactggaggaggagaggagtcGGCACGAAGCGGAGATCAAATgcctgcagcagcagctggcGGAGAGCAAGGCCCGGGTCATCACCCAGCAGCACGAGCGGGCCCAGGAGCAGGGGGACCACGCGCTTATGCTACGGGAGCTGcagaagctgctgcaggaggagaGGGCCGCGCGGCAGGACGTGGAGCTCAAGCTGGAGGAGACCAAGGAATCGCTGGTGGAGAAAATGACGGCGGCCGAGCGGGGGGCCGACTCAGAAGCCCAGCTTAAGCTGCTCTcgagagagatggaggagatGAGGAGGAATCTCCAGGCGGCGGAAGTGGAAAAATGCAAGCCTGACCCCCGGGTGGAGGCCTTACAGCAGGAAATGGCAGAACTCAAGGCCCATTTTCAGCTACAGATCCAACAGGAGGTgaaaaagGCTGCACAGGCAGAGGAGCAGCTTCGAGAGCAGTCCAAGTTGGAAGAAGGTCGTGTGGCCAGCCTTGAAGAAAAAGTCTCGGAGTTGTCGGAGCTGCTGGGAACCTATGAAAAAGCCAAACAGAAGGACCAGCAGATGGTTCAGAAACTCAGAGAACGCATAATGCAGCTagacatggaaaacaaaactttgGCTATGGCTACGTCAACTAGGACGTCTGTAGACCTCACTATTGATGAGACCAATTTAGACGTGAACATGCTAAAAGACAAAATGGACAAGCTGAAAAAGCTGCTTCTGGTGGCAGCCCCCAATTCCCAGCAGCCCCTTGAAATCGAGAAACTGTGTGAGGTGGAGACTGGTGGGAACAATGAGCCTTCAGATGGAGAGAAGGCCACTGTCCTTTATTACCAGCAGGAACTGAGGCAGCTGAAGGATGAGTTTGAGCGGTACAAGATGAGAGCGCAGGTAgtcctcaaaaacaaaaacaccaaggaCTGCAACATGGCCAAAGAGCTGGAGGAAGTGCGAGACCAGCTGTCCGAACTCAAGGAAAAGTACatttctctccgtctctcttcTGACGAAATGGAGAGCAAGCACAAGCGAGAGCTGGACGCCCAGCAGCAGTACGTTTCCAGCCTCCATCAAGGCCACAAGCAGGCGCTGGACAAGCTGGAGTCGGAGTACCACGAGAGATTCCTcaagctggaggaggagctgcaCAAGCAGAGAGACCGGACCCTCGCTCTCTTGACCGAAAAAGATCAAGAGCTGGAGAGGTTACGTTCGGTTTCTTTTGGCTACAGCTTGGGGGGGCACAAAAGCCATGGCGATCACGGTGTGGCAACAGAGACTGACAGCAGGGGGTCTAGCGACACTCTGGATGATTCCACTCAAGACATCATTGCTCAGGCTATTAAACTGGCAGGACCCAACGAGCCCACTCTCCTTCATTACGCTGAGCAGCTGGCCCGAAAGGAAGTGGAGATCAGTGTGTTGAGGAAGCAGAAGCACCGCCTCGAGGCAGACTTCCATCACCTGCAGGACAAGCTTGTGACCAACGAGGAGCGACACAGTGAGGAGGTGGCTCTGCTGCGGGACCAGATCGAGAAGCACGCCAGGGACCAGAGCCGGGAAGGGGCCAACCTGGAGTACCTGAAGAACATAATCTACAGGTTCCTGACCCTGCAGGACTCCCGCGGACGACAGCAAACCCTGACTGCCATTCTTACCATCTTGCACTTCAGCCCCCAAGAGAAACAAGCGGTGGTGAAACTTCAGGCGCACAGCTGGTGGAACACTGGCAAGCGGTAAATGGaacaaaatggaacaaaatggaaaacaatgggATGATGGTTGTAAAGAAAACTAATTACAGATTAAtgagatttatttatatcataaaaTTGGTGTGcatcaaagttttttttaattttatgtttggtTACACAGTGAGGGTTTTTATTGCGCCCTGGATTATATAATATTCAGCTCAAATTGACTAATATTTATTGTTTCGCTGACAGTTTAACTTGTGAATTAAGGAACATTACTGAGAAAAAAGTGACAAGTTTAGTCATTACACAGAGGTGGCGATGGTATGCAAGTTggtgttacattttacaatttgtaatatcatttagtgcCTCTAGAGGTCAACAAAACACAGTCACGTAAGATGCATTCCTGGGTATTTTCAAAAAAGTAAAGTCTGGAATTCATCCAAGAACTTGTATCTATCACGAAGACAAAGTATTGTGTGGAGGGTCGTTAAGCTGACTAATTAGAGAATGTCCTATTTAtagccattttaaaatgactttgttCAAAAAGATTAGTCTAAATTCTGTAGGCTGCAATAAAGGACAAtaatgacaaaaagaaaaaacgggaACAAATAATAAGCACTAAAGTATTTTATGAGAGATGTGCATCTGCCAGTTATAATCTCTTTGGGGAACAAACTCAAAACAGAAgtcagaaataaaaatcaaaaattAAATGAGCCAAGGGACAAGTACCTTGAAGATTTCTTCAAAGGCGCATATCTGACAGTTTTGAGATTATCACTGGCACTTGCATTTGGTTGCATTGTGCTTGGCTAGTCTGGTACAGCTGTAATGCTGAGATTTAAAAAGCTAAAGTTTACAGCAGAGATGTTCTGTGGTGTTCCATTTTCAGCTTAAATACTATGATTTTCTAATTCCTATGGAAACAGCTCCCTGTTCTTTCATTTGTGGGTTAAGGAACTCTTGTCTTAGCAGCTGCAGTATAGAATTCAGCCAAAGCACTAAGACTGAAGACTCTGAAAGTCAATCTGCATAGATTGTGATCCTGACATTTACTGCCTTTGTCCTGTTTCCTGTTGATGTTCCTTTGGGACCTGTGATTCCCTTGTGATCGCCACTGATAAGATAACATCATGATTTAGCTTTCTGATATGTAAGGCTGGCCATGTACTTTGTATCACTTAAGCTACATTAAACACACACCATGACCACATACTTCAGAGCAACAGAAAAGCTCCCActgcatttcaatttttatgATGCCTTTTATAAAACTGCAAGCCTTTGTCTGCAGTCTTTGTGAAGCAGATGAGCAATATATTTAACAGTATTGCATCTGTCTCAAGCTGTGAATATCCAGCACTTGTTGTTGGCTCATGTAAAAGCCCAGAGCttgaaaaatctgaaatggaTCAAATTGCTCTGGAACAGGAGTCATCTTAGCCTCACTGCCATACATAAATGAATAGCAGCAGCCTCAGAAGAGAATTAGCACTTTCTTTTTGATGTAAACTTGGCGAGATGCCTTTATGATTAATTATATGTTGGGTGAAAGCAAAAAAGCTGTGTTTCCTGAGTTACGAAACTCTTCTAATTCTACAGTAACATGACTGATTCCTCTTAATAGTATATtgaataatcaattaaaatggtaaaacagCTAGGGGCTAGAGTGTTGTTACAGATGGTGGAAAGGGGATTTACATGTAATTGGTACTTAAATGTACAGGTGCAATTTAAACTGTAACCCTTGCTCtgccataaaaaaaaacgaCTTTACTCGTTATTTAGAAAACCTCCATCcacaacaattaattaaattcccaTTCCATGGTATATCTtgcaaaattgtatttcttcacCTTGGTGTATGATGTGCCACTTTTATGTGATGTTTTTCAAGTTCGCTGCCCAACCGAGGAGACATGTACTTGTCATCTGGCAACAGGATCACTTTTAACTGTTTTATCCAATGGGGAGAGTTGAGAGGTAGCATCAGGCTTTCATGCTCTTCACAATTAGTTTAGAGATTACTTGTGGGAAAAGGGCAAAATACTATGATAGAAACGAGTAGCAGAAAAGTAAAGGCTCAAACTTGGGCGCTGTGTTATAGCAGCAAGCCAAGGAACGTGAACTGAGTTAATACATTACAGAGCAAATACAATATAGACAAGGCGTGATCTCTGtaacataaaatagaaaacctGTTCGAAAACTGATAGGCTTACTTCTCAAAACACCACTTAATGTGCTATACAGTGCGTGCACCAGGTGTGTTTGGATCTTTTGTAAAAGCATATTTACTGTTTCGTTAAACCAACACCAAAAAAGGTTCTAATGACTGCAAGACAGGAGTTGAGTGCTGCTATTAGGATAGAAATGGTTTATGGCTGATTGTCACCCCATTTACTGTCTCAACCAGTTAAATGGTTTGCCATagaatattatacatttgtgcAGGGATATTTTGTCAACTCATGGTATATCTAGTGCAAGCGATTGGAACCTGTGGCCTTTTCTTGTTTAATCCAAACCACTTCTTTGGGCAGCATTTAAAGGGGTACAGCAATGAGACTGCTGGATCGAAGAAGtacacaaatattgttttcctgaagtcataaagtgttttaataatataggCAGCttggaattgtttttgttactttgtAAAAGCTCCAACAATAAAAGATCAGTCATTTTATAAGGGGGTGTCATTCCcttttgtaaacaaattaaatattgtccTTGTATTTATcttgtatataattgtataatactgtgtttttctctctggaGATAggtctgttttccttttaattggTTTGCCAAAATGAACCGGAACTTTCTAATAAATGCTATTGTTCTAATAATAGTTACTGTTAGTAGATGATGGTACCAGTACTGCACTTACCAATTtagaaattgtatatattacctaaaacaataaaatattttccttgaTGACCctg

Function

GO: NA

KEGG:

id description
K20281 GCC1; GRIP and coiled-coil domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140833 lncRNA upstream 14525 20650704 ~ 20652823 (+) True G112470
TU140827 lncRNA upstream 28362 20638696 ~ 20638986 (+) True G112465
TU140795 lncRNA upstream 95921 20565526 ~ 20571427 (+) True G112438
TU140792 lncRNA upstream 103560 20563498 ~ 20563788 (+) True G112436
TU140791 lncRNA upstream 104073 20563057 ~ 20563275 (+) True G112435
TU140886 lncRNA downstream 93185 20767536 ~ 20773066 (+) True G112510
TU140931 lncRNA downstream 245176 20919527 ~ 20923505 (+) True G112535
TU140937 lncRNA downstream 255883 20930234 ~ 20934218 (+) True G112541
TU140971 lncRNA downstream 348582 21022933 ~ 21023279 (+) True G112564
TU140973 lncRNA downstream 349928 21024279 ~ 21031984 (+) True G112566
AMCG00006798 mRNA upstream 20107 20645229 ~ 20647241 (+) True AMCG00006798
AMCG00006797 mRNA upstream 38725 20620742 ~ 20628623 (+) True AMCG00006797
AMCG00006793 mRNA upstream 104472 20544477 ~ 20562876 (+) True AMCG00006793
AMCG00006794 mRNA upstream 131997 20531355 ~ 20535351 (+) True AMCG00006794
AMCG00006792 mRNA upstream 311984 20344401 ~ 20355364 (+) True AMCG00006792
AMCG00006804 mRNA downstream 1515 20675866 ~ 20692613 (+) True AMCG00006804
AMCG00006803 mRNA downstream 47452 20721803 ~ 20751442 (+) True AMCG00006803
AMCG00006802 mRNA downstream 86076 20760427 ~ 20767061 (+) True AMCG00006802
AMCG00006809 mRNA downstream 234363 20908714 ~ 20918410 (+) True AMCG00006809
AMCG00006811 mRNA downstream 263196 20937547 ~ 20944977 (+) True AMCG00006811
TU139270 other upstream 7623900 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 11099997 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 11943282 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 12490562 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 13012154 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 263146 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 373985 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 468514 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 3357762 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 3630428 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1979409 True 1848 lncRNA 0.50 1 NC_048585.1 32241436 ~ 32243283 (+)