RNA id: AMCG00006802


Basic Information

Item Value
RNA id AMCG00006802
length 2793
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00006802
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20760427 ~ 20767061 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGTCAAAGAGTAACAGGGCTGATGCTCCTCGTGTTGCAGAGGCAGAGGACTATTCCTGTCGCTTCCCCAAAGAGACAAAAACCAGAAGCCGCAGTGGGAagggaaacaataataacaggCAGAGAACTCGCGGCGGTGGCTGCTGCTGAGGACTCTCAGGCGGGACGGGCTCTGGGCATCTTCGGCGGGGTTTCAGCAAGCTCCCACCAGGGACTGATTAACTCCAGAGCCGAGCTGCTGCACTTCCAGCCAAACAAAGCTTCCAGACGGAGCAAGGGTGGTCACAGCAGCGCTCAGCTCTCAGCCTGCGCTCCTGGCTGGCTGTTCAGAGCCACCCCACCCCACATGGGGAGAGAAGACGCTGTGCGCCCAGCTCCCTGTATACTCCGGTCATGGGTGGCTGTCAGAGCTACAGCAGCACAGAGGATGTAGACACACCAGAGCGAAACCAGGACAGCATCTCTGCCCAGAAACCGAAGAACAACAATAGGAAATCGACCCCTTCACTAGAAGACAAACCCTACCTGCTGTCTGCCTATGTAAGGGAGCGCATCACTGAGATGGATATGAAGACCCTGTCCTCACTGCCCGATGGCTTTGACCAAGCAGAGTGGATGGCGACTCACACGATCGCCTTCTTCAAGCACATTAACCTGTTCTCCAGCGCCGTGTCTGAATTCTGCACCACCAAGACTTGTCCGACCACTACTGCCCCCGGCAACACAACCTTCTTTTGGCACGACGAACACGGCAAGAAGGTGAAATGCTCGGCCCCGCTGTACACCGACTACACGATGTCCTACATTCAAGAGCTCCTGACGGACGAAGATGTCTTTCCCACGAGGACCGGTAGCAGCTTCCCCAGTGGATACATCTACATGGTGCAGAAGATCTTCCTCTACCTGTTCCACACGCTGGCCCACCTCTACTGGGCTCACTTCCGTGACGTGGTGAAGCTGGAGATGCACCCCCACCTCAACACGCTCTTCTTGCACTTCATAACCTTCAGCCGGGAGTTCGGCCTGCTGGAGCCGTCCGAGGCCGCCATCATGGAAGACCTCACGCAAGCCCTGTGTCGCTACAACGCCGTCTGACCAGCCCACGAGCCGAGCCCAGGACACAGAGGGGCTGCGGGCCCGACGCGCTGGACCGCAAGAGTCTGGTGCCCATGTGGCAGCCACCTATGGTTTACAAACATTCACAGATTCTCTTCTCAGGAGAACAAAGGCATGATGGTCTTGAGGGAAAAATGAACAGATCTGATCCAAGGCCAGCAGACTCATCATCACGGCCACTGTGTTCATTTCATTCCTGGGGAGGTGACGAGAAGGCATTTCCAGGAGGTTCAGGGTTGACATTAGCAGCTGAATTTGCACTCAAGACTCTCAAGCCATAAAAGAAAGTGAGGCGCGTTTCAAGAGCCTCCTGACAGATTTCCCCATTTCAATGTTAAGGACTTTCCGCTGTGAGGAAACCACCATCCATTCACCCATGCATCTCTTCCCAGGTCTGTTTACGTCCATCACACTGAAATGCGGAGAAACTGAACCCAGACCCATTGTACAGCATTTCTAAGTGAATCCTCAGCTAAAAAAAAGTGTCCCGTTTTACAAGAGAAATCAAGTGCTGGGATATAACAGAAGTGCACAACTCACACTGTTGAGACTTGCCGACACCTGCACTGTGATTGCTTGTGaaattgacaatgtttgaaGTCTGTAATCCTAACATGTTAGTGGAAGGCACTCATCAGTATGTGAATATCGATTACAcccatttgtgtttaaatcGCTCCTGAACTTTGTTTCAGAAGCTTATATTCGACTCgtttttttccacattacaTGACACTCTTGGTTGCTGCTATTCAGAGCTGTGGATGCGAAACAATTTCAGTTACTGTTACAGAAGCACACACATTTCCTTAAGAGATCATGGGAGGAGATTAAATGTACATACCTTTGGCGTGCACTACGACAATTAAGTGGATGTTTTTTGGTTAGCCTTAAAAATTGGAATTTcgattgaaaaataataagttttAAGCAGATAAGACATTCTCGGCACTTCTCACATATATGCATTGCATGTTCTTTATCTCATGTGGCTTTGGCTCATTTTGCTCAATCTAAAAATGCTTCTTAAAGAGGAGTGCCAGGTATCATGACAAGGAGATGAAGCGTGGCACTGTCCTGGAGCAGATCGGTGAATGCTGTGCTAAGCCTCGCTCTCCAGAGAAAATGGGCCCACTAGGGATGGGACGGTTcgaaaggaaaataatattagCAGAACATGAGAGAGAATGCCTCGGAGCACAAACTGTGTGTAAGGGGTCACACAACATAATAAAAGGTGATATTACTGCCACATTGAGATGGGGATCAAATATTTCATCCTGACGCATTGTATACTATGTGGTCTCTAAGAAAGGAGTTTTTACATTGGAGACATTTtactattaaaatgaaactaaatgaaatTTATGTTAAATGTACCCTGACTGATCTACcatttatagaataaaatgcaaatcaaattttttttttttttttgctagaaGCCTAACAACTAATGAATTCCCTTCTTCCTTTGTTGTGAAGGTTTTTAATGGCCCGTGACCATTATTTATACGGTCTCTCAAGCTCAGATATTcttttatttaactgaatttTTGATAATCATctcaataaaaatatgtatatattgagaTTTTTATAACACCGTTCAACTTCTCTGTGGTTTCACTGTCAGCCTAATCCAAGAAACTAATttgttaaaaagtaaatacagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140836 lncRNA upstream 34985 20647378 ~ 20725442 (+) False G112470
TU140833 lncRNA upstream 107604 20650704 ~ 20652823 (+) True G112470
TU140827 lncRNA upstream 121441 20638696 ~ 20638986 (+) True G112465
TU140795 lncRNA upstream 189000 20565526 ~ 20571427 (+) True G112438
TU140792 lncRNA upstream 196639 20563498 ~ 20563788 (+) True G112436
TU140886 lncRNA downstream 475 20767536 ~ 20773066 (+) True G112510
TU140931 lncRNA downstream 152466 20919527 ~ 20923505 (+) True G112535
TU140937 lncRNA downstream 163173 20930234 ~ 20934218 (+) True G112541
TU140971 lncRNA downstream 255872 21022933 ~ 21023279 (+) True G112564
TU140973 lncRNA downstream 257218 21024279 ~ 21031984 (+) True G112566
AMCG00006803 mRNA upstream 8985 20721803 ~ 20751442 (+) True AMCG00006803
AMCG00006804 mRNA upstream 67814 20675866 ~ 20692613 (+) True AMCG00006804
AMCG00006801 mRNA upstream 86076 20667348 ~ 20674351 (+) True AMCG00006801
AMCG00006798 mRNA upstream 113186 20645229 ~ 20647241 (+) True AMCG00006798
AMCG00006797 mRNA upstream 131804 20620742 ~ 20628623 (+) True AMCG00006797
AMCG00006809 mRNA downstream 141653 20908714 ~ 20918410 (+) True AMCG00006809
AMCG00006811 mRNA downstream 170486 20937547 ~ 20944977 (+) True AMCG00006811
AMCG00006815 mRNA downstream 321300 21088361 ~ 21102151 (+) True AMCG00006815
AMCG00006818 mRNA downstream 409487 21176548 ~ 21200739 (+) True AMCG00006818
AMCG00006820 mRNA downstream 498192 21265253 ~ 21265807 (+) False AMCG00006820
TU139270 other upstream 7716979 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 11193076 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 12036361 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 12583641 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 13105233 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 170436 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 281275 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 375804 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 3265052 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 3537718 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile