RNA id: AMCG00006803


Basic Information

Item Value
RNA id AMCG00006803
length 4704
RNA type mRNA
GC content 0.45
exon number 23
gene id AMCG00006803
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20721803 ~ 20751442 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGTTGAGGACAATATCTCAGTTGAAGTGGATCGAAGGAGAAGTTCCATGCTGGTTAATGAAAGGATTTGTAACATTCTGTGCACTCTGCAATCTACAAGACAAATGTTTGTCTGCCTGTGGAAGAGGTTTAATTAAGGATACACACATTTTATCAAcagATCTGTGTGCCCGGTCACCATGTTCTGGAAGTTCGACCTGCACACCACCTCCCACATCGACAAGCTGCTCGACAAGGAGGATGTGACCCTGCGCGAGCTGATGGACGAGGATGACATCCTGCAGGAGTGTAAAGCCCAGAACCGCCGGCTGCTGCTCTTCCTCAGCCAGGACCACTGCATGGAGGAGCTGGTCTCGCTGATCACCCAGGAGCCGCCACAGGACATGGACGAGAAGATCCGCTTCAAGTATCCGAACATTGCCTGTGAGCTGCTGACATCAGATGTGAACCATATCAATGATAAGCTTGGAGGCGAcgagtctttgcttgaaatacTGTATGGCTTTCTGGAACAGGATCCCCCCCTCAATCCTCTCCTGGCCAGCTTCTTCAGTAAAACTATTGGCAACCTCATTGCTAGAAAAACAGAGCAGGTTATCTCTTTCTTAAGGCAGAAAGATGGGTTCATCAGCTTAGTCCTGAAACACATAGATACTTCAGCCATGATGGACCTCCTGCTGCGACTCATCAGCTGTGTGGAGCCCGCGCCTCTGAGGCAGGAGGTCTTGAATtggCTTAATAAGGAGAGACTGATTCAGAGACTCATAGAGCTTATTCAAATAGGAAAAGACGAAGAGAAACAATCGAATTCTTCTCAAACACTCTGTGATATAATTAGACTGAGCAGGGACCAGGCAACTCAGCTGCAGGACACCACAGAGCCTGACCCCCTACTCACTGTGCTCGAGTCGCAGGAAAGTGTTGAAGAGCTGTTGAAGAATATGTTTGAAAGAGATAAGAGTGAAAGCTGCATAGTCAATGGAACTCAAGTGCTACTTACATTATTAGAAACCAGGAGGCCTGGGGTTGAAGGGCTGATGGATTTGTGTACTCAGGGATATGAAAGGTCTTACACTGTCAATAGCAGCATATTACATGGTATTGAGCCTCATCTAAAGGATTTTCAGCAGCTTCTTCTTGAACCTCCTAAGAAATGTGCAATATTGACCACAATCGGAGTGCTTGAAGAGCCACTGGGCAATTCCCGCCTTCACGTAGCCAGACTGATCGCCTCCTTGCTGCAAACAAGCATGCCCAGCATAAACCAGGAGCTTTGTAGGCTAAATACCATGGACCTTCTACTTgatttattttttaaatacacctgGAATAACTTTTTGCACTTCCAAGTGGAGCTGTGTGTAGCAGCGATTCTGAACCACTCGGCCCAGGAAGAGAAAGTTGCAGTGACTCCCGGGAATAAAGAGGAGCCCAGCGTCAGTGCCAGCGCAGACAACCCCGACAGCTCCTCTCACAACATCCTGGTGGCTCATCTTTTCCAGAAGTGCTGTTTGGTGCAGAGGATACTGGATGCCTGGGAAGataatgacaaaatacaGGCAGAAGGTGGGATGAGAAGAGGCAATATGGGGCACCTTACTAGAATAGCCAATACTGTGGTACAGAACATGGAGAAAGGGCCGGTCCAGGCACAGATTAGTGACCTCATCAAAGAGCTGCCCGAGGATTGCCGAGGTCGGTGGGAGAGTTTTGTGGAGGAGACCCTGACGGAGACTAACAGGAGAAACACTGTAGATCTGGTGAGCACGCACAACCTGCACTCTTCCAGTGAGGACGACGACATCGAGAGCCCCTTCCCCAATGAGCTGTCGCTTCAGCAGGCATTCTCAGACTATCAGATTCAGCAGATGACGGCCAACTTCGTTGACCAGTTTGGATTTAATGATGAGGAATTTGCTGAACATGATGATAATATTAAtGCCACCTTTGATAGGATTGCAGAAATAAACTTCAATTTAGATGCTGATGATGAAAGCAGCAACGCAGCTGTGTTTGAGGCATGCTGTAAAGAGAGAATACAGCAGTTTGATGACAATGAAGATGAAGAGGATATCTgggaagagaaagaaataaactaTGCAACGCAAGTCAAATCAAGAACAAGGTTTGGAGTGTCCCGCACGTCGGATAGCTCCTCAAAGAGCGATGTGGAGAACGGAGAGCAGGACAGAAGCATCGAGTCggacgaggaagaggaggaggtggagccAAAGGAGGCCACCATCACTGACacggaaaacaacaaaaacaaaaaacagtctGAAGGCAAAGAGAACGAATCAGCAGAAAGCCCTGGCTGGACAGCTAATTTTGAAGACATCAACTCAAAGTCCCCTGTCCCCTGCGTGGCTGTGGACGTGGGCTCCAGCGTGTGGGACTCTGCTGTCACCCCACATACCACCGCCACCACCGAGACTGAGGAGAAAGGATGGGCAAAATTCACCGATTTCCAGCCTTTCTGTTGCTCAGAGTCAGGCCCCAGATGTAGTTCTCCTGTCGACTCGGAGAGTAACGACTCTGAAGGACATCCCAAACAAAACCAGGATAAGAACTTCATGGGCTCCTCCCCCTGCGTGTGGAACGTGTGCGTGACCCGCAAGGCCCCTCTGGTGGCGTCCGACAGCAGCTCCTCGGGCGGCTCCGACAGCGAGGAGGACGAGGACAAGACGGACATAGTCACCGAGACCATCACCACGGGCGCCGGCCACGAAACCATCAAACTCACCATGGATGCCAAAAACGAGAAAGCCGTCTTCACAAGTGAAGCTGAACCCGTGCTAATAGACAAGCTCAGCATCACAGACGGGCCACAGAGGGGCTCCGAGACCCCCAACAGAACAGAGGCCCCCACAGATCCCCTCAGCTCAGCTAGCACAGAGACCACTGCAACAGACCTCACTGTGAAAGACAGGAAAGACGAGACAGTCCCACCGTCAGAGACGACGCTGAACGGGCCCGCTTGACGACATCAGAGCGAGGGCAGGTTGGAGAGCCACTCTGGGCCGCTTCCATTTTACTCCAAAAACCTCTTGATGCAAcctttgtgtttaaatgaataatgcTGCGATGTTATTGGACCCTACCAATCAGGACCAGAAAATGGGGggctaaaaaaaatacaccataaataaaaaaacaaacaaacaaacaaaaaaaaaaaacattcttacaGAAACTTATTTTTAGCTGATGTTGAAATtgtactgtttaaatgtagcaGTGAACATATGATTACTGTTTCAAAGGATTCAACGTTTTCTTCATTTCCTGGAAGATTTACTCTGGCTGTTTCCgtccatttctctctctgtctctcctttaAACAGTATTGGTTGTGTGTAACAGGGACACGGAACAGCTACGCGCCCCAACGAAGCGGCCCCGCAAATCTCATTCCTAACGAATCTGTCTGACTGCACTTGAACCACTTTTTAGAATAGCCAATCATTTTTCAGGGATGCCACATCTTAACGATCTTGCTTGATAGTCAGAAATCTCTTCCCGCACAGCGCATGTCTGTGATGTCTCCCTGTGTTGAGCTGCTGTTTGTGCAGATtcactatttgttttaaactgataaaaaaaaaatatatgtatttttgtatcagACCTATCTCGAATCCAAAGTCCACTCTTTTTGAAATTGAACATGTTTCTGTTGAGCATGAATATGACAAGAACGTTTTGAGCAGACGGTAATGTTTGTATGCTCTCAACAATGAGTAGGGCGACTCTTGCCTTGAAACTGGGACTCGGTCACTGTACAGTTGAACAGGGATAAGTGTTGTTTTCAGGTGGAGGTGTTAATCCTTCTCTTCGCAGAGTTTGCTTTTATATATTCAGGTAAAGCTATGTTTAATGAGGTAGTACACATAAATCACTAATCTTACAATTAGGGATGTCACAGCACCCAGATGGTGCTTGAAGAATTTGCAGcttctttttcccttttaatgtCACAAATCAAAGGTTCTTAATAGGTGGATGAGATCACAAAAAGCTCACTACATTTTAAGATGGTCTAATAAAGCCAGTAGGGAaatgaatgtgtaaaaataGCTTGGCCCTTTCACATTGGTGGTATAGTTATCCAGTTTGTAATGTTCCCCTTGCAGTGAAGCAATTCCTTATTATCTAGATTTCAAAGTATTTACacttatttatagttttttggGATATGCTAtcatattagttattttttaacttatacatatatgtcattaatttgtaattacCTTATTCATTtgtgggaaatgtttttttttcttaatcaaaATCCAAAAAAGAGACATTAAATGATACtcaaacagagaagaaaaatagaaaataaatgatggTCTGGTGTGCCTGAAAATATACAGGCTGTTAAGAGtttgaaaatttaaataaagacCCGCACATATTTCTACACTTGTTGACTGAACCTTAAGTACCTTAAcataccattatttattttattctcttaaaTCTGTGACATCCCTTCTAGAAGATTTTTGTTTAGTCTTCTAACTTCTAGCAAGTCAGAAtaaggaaacaacaacaacaacttgaTATTTTCTAAACTCATCTTACAGGAAAGAGGCAGAAAAAAGACTAACAAGATAAATGTTTCTTCACAAAACTGGGAAAGAAGAGAAGGCTTCTGTAGTTTAAcactcaaaatgttttttttttttttttatt

Function

GO: NA

KEGG:

id description
K15500 PPP6R2, SAPS2; serine/threonine-protein phosphatase 6 regulatory subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140833 lncRNA upstream 68980 20650704 ~ 20652823 (+) True G112470
TU140827 lncRNA upstream 82817 20638696 ~ 20638986 (+) True G112465
TU140795 lncRNA upstream 150376 20565526 ~ 20571427 (+) True G112438
TU140792 lncRNA upstream 158015 20563498 ~ 20563788 (+) True G112436
TU140791 lncRNA upstream 158528 20563057 ~ 20563275 (+) True G112435
TU140886 lncRNA downstream 16094 20767536 ~ 20773066 (+) True G112510
TU140931 lncRNA downstream 168085 20919527 ~ 20923505 (+) True G112535
TU140937 lncRNA downstream 178792 20930234 ~ 20934218 (+) True G112541
TU140971 lncRNA downstream 271491 21022933 ~ 21023279 (+) True G112564
TU140973 lncRNA downstream 272837 21024279 ~ 21031984 (+) True G112566
AMCG00006804 mRNA upstream 29190 20675866 ~ 20692613 (+) True AMCG00006804
AMCG00006801 mRNA upstream 47452 20667348 ~ 20674351 (+) True AMCG00006801
AMCG00006798 mRNA upstream 74562 20645229 ~ 20647241 (+) True AMCG00006798
AMCG00006797 mRNA upstream 93180 20620742 ~ 20628623 (+) True AMCG00006797
AMCG00006793 mRNA upstream 158927 20544477 ~ 20562876 (+) True AMCG00006793
AMCG00006802 mRNA downstream 8985 20760427 ~ 20767061 (+) True AMCG00006802
AMCG00006809 mRNA downstream 157272 20908714 ~ 20918410 (+) True AMCG00006809
AMCG00006811 mRNA downstream 186105 20937547 ~ 20944977 (+) True AMCG00006811
AMCG00006815 mRNA downstream 336919 21088361 ~ 21102151 (+) True AMCG00006815
AMCG00006818 mRNA downstream 425106 21176548 ~ 21200739 (+) True AMCG00006818
TU139270 other upstream 7678355 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 11154452 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 11997737 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 12545017 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 13066609 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 186055 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 296894 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 391423 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 3280671 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 3553337 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile