RNA id: AMCG00006804



Basic Information


Item Value
RNA id AMCG00006804
length 870
RNA type mRNA
GC content 0.50
exon number 9
gene id AMCG00006804
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20675866 ~ 20692613 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGACTGCGCAAGAGCCTGCGCCCCTGAGTAACAGCACGCTATCCTACACACAGGTCCGTCCGCTGTTCCAGCTCGCTTTGGCCGATTTCCTGGCAGCTGCAGTGCTCCTCTCTACTAGTGTAATCAATATTCTCCCAGGGGAGACCCTGTTTTTATCTTACAAGTTTTGTGAATACAGCATACCTCTGGCATATTGTTTTTACAGTATATCATTCCTGCTGGTTATGGTGTATTCTTATGAAGCTAAGGAAGCAGTGAGCGGCTGGAGGGAATCTTCAGAACCTGACGAACAGGACCCATTTTCGGCTATCCCAGGGCTGTTCATGGTTACCGTAGTGATTCCCTTGAGGAATTCACCTGCAGCAATAATCCCAGTTCAGGGATGGACAGACCTTAAACGTGAAAGTGTAGCCAGTGACAATGCGTTTTACTGCACCAGCTGCATTTTACTAATGCAGAAGAGTGATATCTGTCACAGTGTTGTATATTGCAAAGTGAAAAAGTGGTACCACAGACAACAAGAGGAGTGTTTATTCCTTGTGGAAGGAGACGGATTCAGCCGGAGACACCTCAGAGGGATGTATTGTACAGCGCGCTCCATTGTGCTCGTCgctcTGACCATGTCTCTTCAGGGTTTCTTCAACAGTATAGTTTACGGATGGTTACGCCGTAATTTCCGTGACGTTGCTCTTGGAGAGATCCGGGCTGGCTGGTCAGTGGCGATGGAGGACAGCCTGCAGGTCCTTGGGCAGGGAGCCGATGATGGTCTGTATGTAGAGCTCCAGCTGCTGAAGGACCTCGTCTTTGACCGGCAGCTGCTGCAGACGTGCTCGCACctgacaacacaaacacagcaaggGCCGGCCGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU140833 lncRNA upstream 23043 20650704 ~ 20652823 (+) True G112470
TU140827 lncRNA upstream 36880 20638696 ~ 20638986 (+) True G112465
TU140795 lncRNA upstream 104439 20565526 ~ 20571427 (+) True G112438
TU140792 lncRNA upstream 112078 20563498 ~ 20563788 (+) True G112436
TU140791 lncRNA upstream 112591 20563057 ~ 20563275 (+) True G112435
TU140886 lncRNA downstream 74923 20767536 ~ 20773066 (+) True G112510
TU140931 lncRNA downstream 226914 20919527 ~ 20923505 (+) True G112535
TU140937 lncRNA downstream 237621 20930234 ~ 20934218 (+) True G112541
TU140971 lncRNA downstream 330320 21022933 ~ 21023279 (+) True G112564
TU140973 lncRNA downstream 331666 21024279 ~ 21031984 (+) True G112566
AMCG00006801 mRNA upstream 1515 20667348 ~ 20674351 (+) True AMCG00006801
AMCG00006798 mRNA upstream 28625 20645229 ~ 20647241 (+) True AMCG00006798
AMCG00006797 mRNA upstream 47243 20620742 ~ 20628623 (+) True AMCG00006797
AMCG00006793 mRNA upstream 112990 20544477 ~ 20562876 (+) True AMCG00006793
AMCG00006794 mRNA upstream 140515 20531355 ~ 20535351 (+) True AMCG00006794
AMCG00006803 mRNA downstream 29190 20721803 ~ 20751442 (+) True AMCG00006803
AMCG00006802 mRNA downstream 67814 20760427 ~ 20767061 (+) True AMCG00006802
AMCG00006809 mRNA downstream 216101 20908714 ~ 20918410 (+) True AMCG00006809
AMCG00006811 mRNA downstream 244934 20937547 ~ 20944977 (+) True AMCG00006811
AMCG00006815 mRNA downstream 395748 21088361 ~ 21102151 (+) True AMCG00006815
TU139270 other upstream 7632418 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 11108515 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 11951800 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 12499080 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 13020672 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 244884 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 355723 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 450252 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 3339500 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 3612166 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile