RNA id: AMCG00006805


Basic Information

Item Value
RNA id AMCG00006805
length 3005
RNA type mRNA
GC content 0.40
exon number 6
gene id AMCG00006805
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20656253 ~ 20666945 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctaaaatCAACGGACAGGTGCAAAACAAACAGCTCAGCGCCCATGACGTCTCCCCACCAGAGCGCCGCTTGTCAATAAAGTTGCGTGAAGGCGATGACGTCATTTCTTCCGCGTTGGCCTGTACGTGGCAGCTGCATCAGAGGAGCAGAGGCGGCGAgacgcagacacacagacactcccATCCTGAGCTGCtgctttcaaacacatttctggTTTAAAGATTAGATCGGTATCTGACTCGTCAAGGGGGACTCGCCGAGAATATGGGTCTTACGATCTCGTCGCTTTTCTCCAAGCTTTTTGGCAAGAAGCAGATGCGCATACTTATGGTTGGTTTGGATGCTGCAGGGAAAACCACTATTTTATACAAACTGAAGCTGGGAGAAATCGTTACTACCATTCCAACAATTGGTTTTAATGTTGAGACTGTGGAGTACAGGAACATCTGTTTCACAGTATGGGATGTAGGTGGTCAAGACAAAATTCGTCCCTTGTGGAGACATTACTTCCAGAACACACAGGGCCTCATCTTCGTAGTTGACAGCaacgacagagagagagtggcagAGTCTACAGAGGAGCTGCAGAAGATGTTGCAAGAGGATGAACTTCGGGATGCTGTTTTACTGGTGTTCGCCAACAAACAAGACTTGCCCAATGCCATGAGTGTAGGGGACCTGACAGAGAAGCTCGGCTTACAGAACCTCCGCAACAGAACCTGGTACGTCCAGGCCACCTGTGCCACACAAGGCACCGGTTTATACGACGGACTTGACTGGTTATCCAACGAATTGTCTAAGCGCTAAAGGAGCAAAAGGAGCAAGAACTGAGGCGAACAAGAGAGCAAGTGTGTGCAAGAACGAGAGATGAGAATTTTATAGAGAAACGTGTCTAAAttatcagtgtgtctgtctggtaGAACTTGAAGTTATGGACTTTGCAATCAGTTCCTGTTGTAaaatcttttttccccttcctgtTAGACCTTGTTACTCCCACGTGTTGCTTAGTCCTGGTTTTATTTTACCCAACCTGTCAACTGAAAACTCTTAAagttgcatgtttgtttttttaaagaaagagaaaataaattaacagtggTCTGGAGGAGTGCATAATGGATGGCACTGGATGACATTCAGCACTAAAGCCCTGTCTTGTACTCTAGAGACTGAGACGCATTTGTCACTAATCAGAAGTCAAATTTGACCTTTTCGACTCGATTGCCTCCTGGGATAGCCAAACTGACAACTCTTCTGAATATCAGTGGGTTGCAGAACTATCcagaaagctgtttttttacagaaaagtgCTTTGTAGGAAGCCAGATAGAAAGATGACCACCATTCTGAAGGAATTTCATGGGCCATTTATTTGCAATAATAGATGTATTTCCCTGTTGACATCTTTCTTGATATGGTCTATGAAAACACGATAAATCTTACACTAttaacacagtttttttttgtttttgtttttttaaacgtaCCCCTTTCTcgtatacataaaaaaaaaatatccgtCAATGACAGAACAGGATATTGCATTATTGCGTTTTGTACAGTGCTTTGATATTGCAGCTTTTGTGGTGCAAGAAGGAATCCAATACAGAGCTTGCAGGGCAGTGCTATGGATCCTATTGTCATTTCCCTGCTGTTCATTTCCGAAACTGTACCTTCCCAAGGTAGCCCGATCCACATCGTGCACGGATCAACCAGAGTGCGTTACATTGACTCGATCTgttgtacaaaaaataaaacaaactcgGTTACTgactttgtgtgtttaaaaaaaaaaaagacgaattggagatggatttttttgtttaatttcactttaccttgtgttttgtttttttaagtattttattttaatattttataaagtatttgaAGTTATTAAAAAGAGGGAAAATGGATTGTGAATGTTTGTCTTCTGTCCTGCTTGGTTTTAATTGCTGCTTTGGGGTAAATATCAGGAATAGTCTGAGGGGAATTCACCCGAGGTACAAAGCGACAACaaaaattaattgtatataatttccTATTAGGTGTGTTTGCTGTGTTATCAGTTATGGTACTTTCAATACTGTTAATTATCCTGCATTTCCAAATCCTTTTGTATTGTCCTGTTCTCACAGTGATGTTTCTGAGCCTTTGGACCCCCTGTCCTATTCTGTGTGTTGTATCAGCTCTGTGAACACTTTATATGATGAGCCCTCCTGAAAAATATGTTATggaaaatgttttctaaaatcCAAAAGACTGCTAATAAAACCAAATCAGGTCACTGTGATGCCAGTTTCATATGTTTTTCAGATCATTGCCACAGATGTTAAGACTTCAGCTCGCATAggtctttttaattatttattaattcagctAACCCTGCAGTATGCACTGGTGAACGTATGCTTGACAAGATGATGTATAATTATTCTGTTAACGGTATATGTGATGGCATCcgtttactgttgttttttttgtctttttgtattctACGggtcttttctgttttgcttttaagtAAAGTCATTTGTCACAATTAGGTTTTCtcctttattttcaaacatctcTGTGGGTGGGTGTAACCACAGCAAACGACTGCTAATGTCATCTTGTCTTAAATGATCAAAATGGAACGAGAACGCTGGCTGACTGAGATCTGCCAACTGAAGAAAAATGTCACCTATTTCTACATTGTGTAAACAGGCTTCAGTTCACCACATTTCTCAATCTCATTTCCTGTGGTGCCTCAGTCTATGCAGGGactttgttttgcatatttcgCTCTTGCAGCAGAGTCCTTCCTGTatctgttttgtaaatgtgctGCTTTCATAAAACGGCCCTATGCTGTTTCCAAGTGTGTGTCACATTAAACCAATATGTCAAATGGACTTTTTATATGTATAGGCCAATGCCTTGGGTTTGAGGTGCATTTAGGGAGATGCTAACAATACACTTGCTCTTGgtttttgctatttttttttttttgtttctgag

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07940 ARF5; ADP-ribosylation factor 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140858 lncRNA downstream 2594 20651041 ~ 20653659 (-) False AMCG00006807
TU140857 lncRNA downstream 3413 20651041 ~ 20652840 (-) True AMCG00006807
TU140855 lncRNA downstream 6637 20647320 ~ 20649616 (-) False AMCG00006807
TU140765 lncRNA downstream 576842 20078891 ~ 20079411 (-) True G112410
TU140629 lncRNA downstream 1024358 19623221 ~ 19631895 (-) False AMCG00006773
TU140871 lncRNA upstream 47138 20714083 ~ 20756786 (-) True G112496
TU140949 lncRNA upstream 277224 20944169 ~ 20964562 (-) True AMCG00006813
TU140964 lncRNA upstream 330321 20997266 ~ 20997529 (-) True G112557
TU140969 lncRNA upstream 348428 21015373 ~ 21016048 (-) True G112562
TU140970 lncRNA upstream 350256 21017201 ~ 21017740 (-) True G112563
AMCG00006807 mRNA downstream 3629 20647874 ~ 20652624 (-) False AMCG00006807
AMCG00006800 mRNA downstream 18649 20627532 ~ 20637604 (-) True AMCG00006800
AMCG00006799 mRNA downstream 38303 20612370 ~ 20617950 (-) True AMCG00006799
AMCG00006796 mRNA downstream 77777 20574797 ~ 20578476 (-) True AMCG00006796
AMCG00006795 mRNA downstream 602445 20047941 ~ 20053808 (-) True AMCG00006795
AMCG00006806 mRNA upstream 22447 20689392 ~ 20707958 (-) True AMCG00006806
AMCG00006808 mRNA upstream 100817 20767762 ~ 20844220 (-) True AMCG00006808
AMCG00006810 mRNA upstream 252589 20919534 ~ 20934215 (-) True AMCG00006810
AMCG00006813 mRNA upstream 281931 20948876 ~ 20949746 (-) False AMCG00006813
AMCG00006814 mRNA upstream 365453 21032398 ~ 21048481 (-) True AMCG00006814
TU140776 other downstream 420047 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 1020328 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 2315043 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 3022808 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 4903018 15752821 ~ 15753235 (-) True G111767
TU140946 other upstream 187112 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 2737230 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 5833070 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 6735655 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 7600317 28267262 ~ 28292598 (-) False G113775

Expression Profile