RNA id: TU140855


Basic Information

Item Value
RNA id TU140855
length 798
lncRNA type sense_over
GC content 0.40
exon number 3
gene id AMCG00006807
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20647320 ~ 20653659 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAATCTTTTTGATGATGTAACTCCCATATGTGTATTTAAGACGAAGACTTTCTGTTCAGACAGAAGGTCTTCCGAGCTTCCTGCTTTACTTTTCAATGGGTCCAGTGGCCATGGATTCCATTCCTGTTCTGCTTGCTGTAGCTGTCTTTTAGATTTGGGAACATGATTCTGTGGACTATTTTCAGACGTCTGCTCCCAAGGGCAGACCACCAGTCTCTAGGTCTCTCTGAGATCTGGCTGTACTGGTGAACTGAGCCAACTGGCAAATACTATCGTTCTGAAGATGGAACAGAATTAATGACAAATGTAGAATGAAGAAATAATGTGAAGCAATGTAATAAAGCCTGCAAAGATCAAAGCAACCACACAAAGACAACAAACCCTGAACCTCAACTGCCTCTCGTACGCTACCATAAAGAAACCAATGAAACCCtgctgaatgtttgtttttactgaatcCTCAATGACGTCTATTTACTCTGCGGTTTATTTTGGTGCTGTGAGAAAGGGTGTAAATTAACACTTGGTTTGCCGTGTGCACAAATACTACAGCACATTTGAGTGTGCTGCAGTAGGTGTCACACGGGAACTGGCTTGTGGTTGTCTACATTGCTTGGTTGGGTGGTCCTCCCGGGACTCactcgtaaaaaaaaaaaaaaaaaagtgatgtgaaaaaaaaggCATTCTGCATATCttcctgctttaaaaaataataaaaatagaaaaatgtgaaacaatatGCTGTTGCTGTCTCTTcctaatataattaataatgtacagTACATGCTTTATGGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140765 lncRNA downstream 567909 20078891 ~ 20079411 (-) True G112410
TU140629 lncRNA downstream 1015425 19623221 ~ 19631895 (-) False AMCG00006773
TU140630 lncRNA downstream 1015425 19623221 ~ 19631895 (-) False AMCG00006773
TU140619 lncRNA downstream 1077648 19568517 ~ 19569672 (-) True G112292
TU140617 lncRNA downstream 1081305 19564956 ~ 19566015 (-) True G112290
TU140857 lncRNA upstream 1425 20651041 ~ 20652840 (-) True AMCG00006807
TU140858 lncRNA upstream 1425 20651041 ~ 20653659 (-) False AMCG00006807
TU140871 lncRNA upstream 64467 20714083 ~ 20756786 (-) True G112496
TU140949 lncRNA upstream 294553 20944169 ~ 20964562 (-) True AMCG00006813
TU140964 lncRNA upstream 347650 20997266 ~ 20997529 (-) True G112557
AMCG00006800 mRNA downstream 9716 20627532 ~ 20637604 (-) True AMCG00006800
AMCG00006799 mRNA downstream 29370 20612370 ~ 20617950 (-) True AMCG00006799
AMCG00006796 mRNA downstream 68844 20574797 ~ 20578476 (-) True AMCG00006796
AMCG00006795 mRNA downstream 593512 20047941 ~ 20053808 (-) True AMCG00006795
AMCG00006789 mRNA downstream 647819 19986747 ~ 19999501 (-) True AMCG00006789
AMCG00006805 mRNA upstream 6637 20656253 ~ 20666945 (-) True AMCG00006805
AMCG00006806 mRNA upstream 39776 20689392 ~ 20707958 (-) True AMCG00006806
AMCG00006808 mRNA upstream 118146 20767762 ~ 20844220 (-) True AMCG00006808
AMCG00006810 mRNA upstream 269918 20919534 ~ 20934215 (-) True AMCG00006810
AMCG00006813 mRNA upstream 299260 20948876 ~ 20949746 (-) False AMCG00006813
TU140776 other downstream 411114 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 1011395 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 2306110 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 3013875 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 4894085 15752821 ~ 15753235 (-) True G111767
TU140946 other upstream 204441 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 2754559 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 5850399 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 6752984 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 7617646 28267262 ~ 28292598 (-) False G113775

Expression Profile