RNA id: TU140858


Basic Information

Item Value
RNA id TU140858
length 714
lncRNA type sense_over
GC content 0.49
exon number 4
gene id AMCG00006807
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20647320 ~ 20653659 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAGGGTGCTGCTGGGATTGAAACATGAGGTGTGTGGGTGGAGCCTGTGAGATGACGTGCGGCCCGTATATAAACAGCAGCGCTGCGTGCGTCTGTCTCTTCATCCCGCACAGCTGCTGCGCAGGGAGGCCGTGACTGGGTGCCTTTAACGATGAGGGCCCATCCTTTTCTGCTTGCTTAAACCTATTCAGgaggaggagaaggcgATATCCCTGTTCCCACGACAGGGAGACCATGTCCCAGTCAGGGATGTGGGTGGGCAGATCCAGTGTCACAGCTTGTCAAGATCTTAAAGCGTGAAAGCACTGACCTCGAAGCAGCGTATCAACGTGACAAAGACACAGAAGCATCCTACAAAAACAACCAGAAAATTTCCCTTACCCTTTCCCTTAGCTTCTGGTTTGTCTGCGTTGCATGGTTCGGTGGGTCGAGGGAACCCACTGGGAAAACACGATCACTTTGGAATGCCTGGGACCACAATGCCAGTTATTCAAAGAACAGTGGAAAGTAACATAGACCTGGACCCAAACGCATCTCCAACCCACCTGCCAACACATTTTGGCAGGTGGGTTAAAGTGTGGGTTTAGTCCGGGCCCAAGTCTCCTAAAACTGTCTTCAGATGACTTAATTTCGCCCAGGACTTTATAATCAAGGCGGGAcgcattgttttcttaaaaaaataaatgaataaaaaaagaaaaatctgaaactga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140855 lncRNA downstream 1425 20647320 ~ 20649616 (-) False AMCG00006807
TU140765 lncRNA downstream 571630 20078891 ~ 20079411 (-) True G112410
TU140629 lncRNA downstream 1019146 19623221 ~ 19631895 (-) False AMCG00006773
TU140630 lncRNA downstream 1019146 19623221 ~ 19631895 (-) False AMCG00006773
TU140619 lncRNA downstream 1081369 19568517 ~ 19569672 (-) True G112292
TU140871 lncRNA upstream 60424 20714083 ~ 20756786 (-) True G112496
TU140949 lncRNA upstream 290510 20944169 ~ 20964562 (-) True AMCG00006813
TU140964 lncRNA upstream 343607 20997266 ~ 20997529 (-) True G112557
TU140969 lncRNA upstream 361714 21015373 ~ 21016048 (-) True G112562
TU140970 lncRNA upstream 363542 21017201 ~ 21017740 (-) True G112563
AMCG00006800 mRNA downstream 13437 20627532 ~ 20637604 (-) True AMCG00006800
AMCG00006799 mRNA downstream 33091 20612370 ~ 20617950 (-) True AMCG00006799
AMCG00006796 mRNA downstream 72565 20574797 ~ 20578476 (-) True AMCG00006796
AMCG00006795 mRNA downstream 597233 20047941 ~ 20053808 (-) True AMCG00006795
AMCG00006789 mRNA downstream 651540 19986747 ~ 19999501 (-) True AMCG00006789
AMCG00006805 mRNA upstream 2594 20656253 ~ 20666945 (-) True AMCG00006805
AMCG00006806 mRNA upstream 35733 20689392 ~ 20707958 (-) True AMCG00006806
AMCG00006808 mRNA upstream 114103 20767762 ~ 20844220 (-) True AMCG00006808
AMCG00006810 mRNA upstream 265875 20919534 ~ 20934215 (-) True AMCG00006810
AMCG00006813 mRNA upstream 295217 20948876 ~ 20949746 (-) False AMCG00006813
TU140776 other downstream 414835 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 1015116 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 2309831 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 3017596 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 4897806 15752821 ~ 15753235 (-) True G111767
TU140946 other upstream 200398 20854057 ~ 20949836 (-) False AMCG00006813
TU141596 other upstream 2750516 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 5846356 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 6748941 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 7613603 28267262 ~ 28292598 (-) False G113775

Expression Profile