RNA id: AMCG00006809


Basic Information

Item Value
RNA id AMCG00006809
length 1545
RNA type mRNA
GC content 0.42
exon number 10
gene id AMCG00006809
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20908714 ~ 20918410 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCACTGCCATAGGTGCAACATGTGCCAGAGAGATTATCCTTTAAACCTGTCAATTATATATCCTTGTATAGGCCTGGTGCAGCACAACTGATATATATGAAcacttttttataattatttagtcAACTTGGAGAAACTGCAGCAAAATGAGGGTCATCGATACCGGACCTGATCCTTCAAAGGTATATCGACCAGAACATGAGGCAAATAAAACAACGGAAGAGAAAACTGGGTTCAGGAATTTTGAGAGTGGGGATCTTATTGAGCGGGTGTATAACACCTACAAACTGATGCACACCAACCAGACCATGGACTTTGTGAAGCAAAAGCATGCCGAGTGGGCCGGGTGCAGCCACACCAAGATGACTGTCATGGAAAGTCTGGATGCTCTGGACAAACTGGTGGATGAGTCTGACCCCGACGTTGACTTCCCCAACTCGTTCCATGCTTTCCAGACGGCGGAGGGGATTCGCAAGGCACACCCTGACAAAGATTGGTTCCAACTGGTGGGCCTCATACATGACATTGGGAAGATCATGGCTCTTTGGGGACAGCCGCAGTGGGCAGTTGTTGGCGACACCTTCCCAGTTGGCTGCCATTTCCAGAATTCGATTGTTTTCAAGGACTCTACCTTTGCGGAAAATCCAGATAACAACAACCCATCCTACAACACCAAATATGGGATATACAAGCCTAACTGTGGACTGGACAACGTGTACATGTCTTGGGGTCATGACGaatatatttacaGGGTGATGAAATTCAACAACTGCTCTATTCCAGAGGAGGGCTTGTACATGATTCGGTTCCACTCATTCTATCCCTGGCACACCCATGGAGACTACACATATCTCTGCAATGACAAGGATCTGAAGATGTTACCTTGGGTGAAAGAGTTCAACAAATTTGACCTCTATACGAAGAGTACAGACCTACCTGATGTTGAGAATCTGAAGCCATACTATCAGCGTCTCATTGACAAGTACTGCCCGGGGAAGCTGTACTGGTGAGAAGATGCATCCGTTCCAGGTGTCTGTATGCGTGTGCTGTAAAGGAGATCCACTTCAATCATGTTGTATAGTAATGCTTTTGTCTCAGTCTTCTCGCTGGGAAAacaaagtatgttttttgtaattgttcctacatacatgttaaatatgtcAAAATAGGATTCTACAATATTGTATCCCAGGAGTAACCCTTAACATTAGTTTATTACAactaaaatgcaattatattaaaGATTTGGGTTTTCATGTAATAAATACGCTTCTGTAGCTGTAGATCAGATCAGAGCTCTTGTAGTCTTTACAGATGTGTGCTATTCAAAAGGTCTGCTTTCCTGTTTGCCCTGTCACACAGCCGTTATCAAACATTGCAATAAAATGCAGATAACATACGACAGGATTGGAAGCTGCAAACTTCAAATACCCgattcaaaacaaattgaagacTTTCAGGAACTGATTTGCTaagattaataatataattcccATTATCTTATTAAATTATAAGAATGAATTAAATGGATGCTTCAGACATGA

Function

GO:

id name namespace
GO:0019310 inositol catabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005506 iron ion binding molecular_function
GO:0050113 inositol oxygenase activity molecular_function

KEGG:

id description
K00469 MIOX; inositol oxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140886 lncRNA upstream 135648 20767536 ~ 20773066 (+) True G112510
TU140836 lncRNA upstream 183272 20647378 ~ 20725442 (+) False G112470
TU140833 lncRNA upstream 255891 20650704 ~ 20652823 (+) True G112470
TU140827 lncRNA upstream 269728 20638696 ~ 20638986 (+) True G112465
TU140795 lncRNA upstream 337287 20565526 ~ 20571427 (+) True G112438
TU140931 lncRNA downstream 1117 20919527 ~ 20923505 (+) True G112535
TU140937 lncRNA downstream 11824 20930234 ~ 20934218 (+) True G112541
TU140971 lncRNA downstream 104523 21022933 ~ 21023279 (+) True G112564
TU140973 lncRNA downstream 105869 21024279 ~ 21031984 (+) True G112566
TU140980 lncRNA downstream 137940 21056350 ~ 21056973 (+) True G112573
AMCG00006802 mRNA upstream 141653 20760427 ~ 20767061 (+) True AMCG00006802
AMCG00006803 mRNA upstream 157272 20721803 ~ 20751442 (+) True AMCG00006803
AMCG00006804 mRNA upstream 216101 20675866 ~ 20692613 (+) True AMCG00006804
AMCG00006801 mRNA upstream 234363 20667348 ~ 20674351 (+) True AMCG00006801
AMCG00006798 mRNA upstream 261473 20645229 ~ 20647241 (+) True AMCG00006798
AMCG00006811 mRNA downstream 19137 20937547 ~ 20944977 (+) True AMCG00006811
AMCG00006815 mRNA downstream 169951 21088361 ~ 21102151 (+) True AMCG00006815
AMCG00006818 mRNA downstream 258138 21176548 ~ 21200739 (+) True AMCG00006818
AMCG00006820 mRNA downstream 346843 21265253 ~ 21265807 (+) False AMCG00006820
AMCG00006822 mRNA downstream 425232 21343642 ~ 21354607 (+) True AMCG00006822
TU139270 other upstream 7865266 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 11341363 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 12184648 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 12731928 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 13253520 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 19087 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 129926 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 224455 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 3113703 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 3386369 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile